SMTL ID : 3zbv.1

Crystal Structure of murine Angiogenin-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: D.41, H.82 Chain B: H.113 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:D.41, A:H.82, B:H.113, H2O.11, H2O.11 ZN.5: 3 residues within 4Å: Chain A: H.113 Chain B: D.41, H.82 5 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:H.113, B:D.41, B:H.82, H2O.5, H2O.5

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 9 residues within 4Å: Chain A: F.38, K.40, D.41, V.42 Chain B: F.38, K.40, D.41, V.42 Ligands: SO4.6 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.41, A:V.42, B:D.41, B:V.42 Salt bridges: A:K.40, B:K.40 SO4.3: 5 residues within 4Å: Chain A: G.84, R.85, S.86, R.92 Chain B: N.67 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.85, A:S.86, A:S.86, B:N.67 Water bridges: A:R.92, B:R.66 Salt bridges: A:R.92 SO4.6: 9 residues within 4Å: Chain A: F.38, K.40, D.41, V.42 Chain B: F.38, K.40, D.41, V.42 Ligands: SO4.2 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.41, A:V.42, B:D.41, B:V.42 Salt bridges: A:K.40, B:K.40 SO4.7: 5 residues within 4Å: Chain A: N.67 Chain B: G.84, R.85, S.86, R.92 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:N.67, B:R.85, B:S.86, B:S.86 Water bridges: A:R.66, B:R.92 Salt bridges: B:R.92

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: Y.14, T.49, K.50, N.51 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.14, A:Y.14, A:K.50, A:K.50, A:N.51, A:N.51 Water bridges: A:N.51 GOL.8: 4 residues within 4Å: Chain B: Y.14, T.49, K.50, N.51 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.14, B:K.50, B:K.50, B:N.51, B:N.51 Water bridges: B:N.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iyer, S. et al., Crystal Structures of Murine Angiogenin-2 and -3 - Probing 'Structure - Function' Relationships Amongst Angiogenin Homologues. FEBS J. (2013)

Release Date

2012-12-26

Peptides

ANGIOGENIN-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ANGIOGENIN-2