SMTL ID : 3zbw.1

Crystal Structure of murine Angiogenin-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 3 residues within 4Å: Chain A: E.41, H.82 Ligands: ZN.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.41

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Q.12, H.13, K.40, H.113, F.114 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.12, A:F.114 Water bridges: A:K.8, A:K.8, A:H.13, A:N.43, A:F.114 Salt bridges: A:H.13, A:K.40, A:H.113 SO4.5: 5 residues within 4Å: Chain B: Q.12, H.13, K.40, H.113, F.114 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:F.114 Water bridges: B:K.40, B:K.40, B:K.40, B:E.116, B:E.116 Salt bridges: B:H.13, B:K.40, B:H.113

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: Y.14, T.49, K.50 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.14, H2O.5 ZN.4: 4 residues within 4Å: Chain A: E.41, H.82, K.83 Ligands: ACY.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.41, A:H.82, H2O.2, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iyer, S. et al., Crystal Structures of Murine Angiogenin-2 and -3 - Probing 'Structure - Function' Relationships Amongst Angiogenin Homologues. FEBS J. (2013)

Release Date

2012-12-26

Peptides

ANGIOGENIN-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ANGIOGENIN-3