SMTL ID : 3zcb.1

VbhT Fic protein from Bartonella schoenbuchensis in complex with VbhA antitoxin mutant E24G and ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: S.88, F.90, N.133, H.136, E.140, G.141, N.142, G.143, R.144, R.147, M.171, S.175, I.176 Chain B: S.20, L.23, G.24 Ligands: MG.2 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.88, A:N.133, A:G.141, A:N.142, A:N.142, A:G.143, A:R.144, A:R.147, A:S.175, B:L.23 Salt bridges: A:H.136, A:R.144, A:R.147

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: E.140 Ligands: ATP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.140, H2O.3, H2O.4, H2O.5

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: Q.28, E.32, E.35, Y.72, E.140, R.144 Chain B: L.26 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.28, A:Q.28, A:Y.72, A:E.140, A:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goepfert, A. et al., Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold. Plos One (2013)

Release Date

2013-06-19

Peptides

ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE VBHT: A
ANTITOXIN VBHA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE VBHT

ANTITOXIN VBHA