SMTL ID : 3zd2.1

THE STRUCTURE OF THE TWO N-TERMINAL DOMAINS OF COMPLEMENT FACTOR H RELATED PROTEIN 1 SHOWS FORMATION OF A NOVEL DIMERISATION INTERFACE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.14, L.15, Y.16, D.17 Ligands: EDO.11 Ligand excluded by PLIP EDO.2: 6 residues within 4Å: Chain A: Y.16, V.32, F.33, Y.34 Chain B: P.72, F.73 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: V.74, E.75, N.76, G.77, H.78, N.97 Ligand excluded by PLIP EDO.4: 1 residues within 4Å: Chain A: S.45 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: F.70, G.83, Q.84, T.85 Chain B: W.49 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: F.73, V.74, E.75, P.120, K.121, C.122 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: S.36, C.37, E.38, F.41, S.47, F.48 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: V.112, R.114, W.116, S.117 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: Q.84, T.85, H.86, D.90 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: V.42, K.46, L.68 Chain B: K.46, S.47, F.48 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain A: I.14, W.49 Chain B: Y.39, N.40 Ligands: EDO.1, EDO.14 Ligand excluded by PLIP EDO.12: 7 residues within 4Å: Chain B: S.36, C.37, V.42, S.43, K.46, S.47, F.48 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain B: W.49, T.50, R.51, P.61 Ligand excluded by PLIP EDO.14: 8 residues within 4Å: Chain A: F.48, W.49 Chain B: N.40, L.68, C.69, F.70, W.116 Ligands: EDO.11 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: P.72, F.73 Chain B: Y.16, Y.21, V.32 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain B: E.88, V.112, E.113 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goicoechea De Jorge, E. et al., Dimerization of Complement Factor H-Related Proteins Modulates Complement Activation in Vivo. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-03-13

Peptides

COMPLEMENT FACTOR H-RELATED PROTEIN 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COMPLEMENT FACTOR H-RELATED PROTEIN 1