SMTL ID : 3zd7.1

Snapshot 3 of RIG-I scanning on RNA duplex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.581, C.584, C.635, C.640 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.581, A:C.584, A:C.635, A:C.640

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: K.41, D.143 Ligands: ADP.3 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 15 residues within 4Å: Chain A: N.7, L.8, F.12, K.13, P.14, R.15, Q.18, T.37, G.38, C.39, G.40, K.41, T.42, F.43 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.7, A:N.7, A:K.13, A:R.15, A:R.15, A:Q.18, A:G.38, A:C.39, A:G.40, A:K.41, A:T.42, A:T.42, A:T.42 Salt bridges: A:K.41 pi-Stacking: A:F.43 pi-Cation interactions: A:R.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kohlway, A. et al., Defining the Functional Determinants for RNA Surveillance by Rig-I. Embo Rep. (2013)

Release Date

2013-08-07

Peptides

PROBABLE ATP-DEPENDENT RNA HELICASE DDX58: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROBABLE ATP-DEPENDENT RNA HELICASE DDX58