SMTL ID : 3zed.3 (2 other biounits)

X-ray structure of the birnavirus VP1-VP3 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: K.256, W.322, S.323, A.324, H.329, G.472, N.473 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.256, A:K.256, A:W.322, A:A.324, A:A.324 Water bridges: A:S.245, A:A.474 GOL.4: 7 residues within 4Å: Chain A: I.347, Q.351, T.352, P.353, L.382, V.383, R.695 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.695, A:R.695

2 x K: POTASSIUM ION(Non-covalent)

K.2: 6 residues within 4Å: Chain A: V.177, N.182, N.184, N.409, G.512, N.514 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:V.177, A:N.182, A:G.512 K.3: 5 residues within 4Å: Chain A: Q.203, T.698, S.701, P.702, K.704 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.698, A:S.701, A:P.702, A:K.704, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bahar, M.W. et al., Structure of a Vp1-Vp3 Complex Suggests How Birnaviruses Package the Vp1 Polymerase. J.Virol. (2013)

Release Date

2013-01-16

Peptides

RNA-DIRECTED RNA POLYMERASE: A
CAPSID PROTEIN VP3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

RNA-DIRECTED RNA POLYMERASE

CAPSID PROTEIN VP3

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