- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x NI: NICKEL (II) ION(Non-covalent)
- 3 x DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE(Non-covalent)
DUP.3: 21 residues within 4Å:- Chain A: G.112, K.113, I.114, D.115, Y.118, N.121, L.122, G.123, N.125
- Chain B: R.194, G.198, F.199, G.200, S.201, S.202
- Chain C: N.54, R.98, S.99, G.100, Q.171
- Ligands: MG.4
23 PLIP interactions:6 interactions with chain C, 10 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: C:R.98, C:S.99, C:S.99, C:S.99, C:G.100, C:Q.171, A:D.115, A:D.115, A:D.115, A:Y.118, A:G.123, A:G.123, A:N.125, B:F.199, B:G.200, B:S.201, B:S.202
- Hydrophobic interactions: A:I.114, A:Y.118
- Water bridges: A:K.113, B:R.194, B:R.194
- Salt bridges: B:R.194
DUP.8: 21 residues within 4Å:- Chain A: N.54, R.98, S.99, G.100, Q.171
- Chain B: G.112, K.113, I.114, D.115, Y.118, N.121, L.122, G.123, N.125
- Chain C: R.194, G.198, F.199, G.200, S.201, S.202
- Ligands: MG.9
22 PLIP interactions:9 interactions with chain B, 7 interactions with chain C, 6 interactions with chain A- Hydrophobic interactions: B:I.114, B:Y.118
- Hydrogen bonds: B:D.115, B:D.115, B:Y.118, B:G.123, B:G.123, B:N.125, C:F.199, C:G.200, C:S.201, C:S.202, A:R.98, A:S.99, A:S.99, A:S.99, A:G.100, A:Q.171
- Water bridges: B:K.113, C:R.194, C:R.194
- Salt bridges: C:R.194
DUP.13: 21 residues within 4Å:- Chain A: R.194, G.198, F.199, G.200, S.201, S.202
- Chain B: N.54, R.98, S.99, G.100, Q.171
- Chain C: G.112, K.113, I.114, D.115, Y.118, N.121, L.122, G.123, N.125
- Ligands: MG.14
21 PLIP interactions:7 interactions with chain A, 6 interactions with chain B, 8 interactions with chain C- Hydrogen bonds: A:F.199, A:G.200, A:S.201, A:S.202, B:R.98, B:S.99, B:S.99, B:S.99, B:G.100, B:Q.171, C:D.115, C:D.115, C:G.123, C:G.123, C:N.125
- Water bridges: A:R.194, A:R.194, C:K.113
- Salt bridges: A:R.194
- Hydrophobic interactions: C:I.114, C:Y.118
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 4 residues within 4Å:- Chain C: D.62, R.98, Q.171
- Ligands: DUP.3
No protein-ligand interaction detected (PLIP)MG.9: 4 residues within 4Å:- Chain A: D.62, R.98, Q.171
- Ligands: DUP.8
No protein-ligand interaction detected (PLIP)MG.14: 4 residues within 4Å:- Chain B: D.62, R.98, Q.171
- Ligands: DUP.13
No protein-ligand interaction detected (PLIP)- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.5: 3 residues within 4Å:- Chain A: H.106, H.130, R.141
4 PLIP interactions:4 interactions with chain A- Water bridges: A:N.145
- Salt bridges: A:H.106, A:H.130, A:R.141
PO4.10: 3 residues within 4Å:- Chain B: H.106, H.130, R.141
4 PLIP interactions:4 interactions with chain B- Water bridges: B:N.145
- Salt bridges: B:H.106, B:H.130, B:R.141
PO4.15: 3 residues within 4Å:- Chain C: H.106, H.130, R.141
4 PLIP interactions:4 interactions with chain C- Water bridges: C:N.145
- Salt bridges: C:H.106, C:H.130, C:R.141
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tormo-Mas, M.A. et al., Phage Dutpases Control Transfer of Virulence Genes by a Proto-Oncogenic G Protein-Like Mechanism. Mol.Cell (2013)
- Release Date
- 2013-01-30
- Peptides
- DUTPASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x NI: NICKEL (II) ION(Non-covalent)
- 3 x DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tormo-Mas, M.A. et al., Phage Dutpases Control Transfer of Virulence Genes by a Proto-Oncogenic G Protein-Like Mechanism. Mol.Cell (2013)
- Release Date
- 2013-01-30
- Peptides
- DUTPASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A