SMTL ID : 3zf2.1

Phage dUTPases control transfer of virulence genes by a proto- oncogenic G protein-like mechanism. (Staphylococcus bacteriophage 80alpha dUTPase).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-trimer

Ligands

6 x NI: NICKEL (II) ION(Non-covalent)(Non-functional Binders)

NI.1: 5 residues within 4Å: Chain A: D.129 Chain B: D.129 Chain C: D.129 Ligands: NI.5, NI.9 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:D.129, B:D.129, A:D.129, H2O.2, H2O.4 NI.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NI.5: 5 residues within 4Å: Chain A: D.129 Chain B: D.129 Chain C: D.129 Ligands: NI.1, NI.9 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:D.129, B:D.129, A:D.129, H2O.1, H2O.4 NI.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NI.9: 5 residues within 4Å: Chain A: D.129 Chain B: D.129 Chain C: D.129 Ligands: NI.1, NI.5 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:D.129, B:D.129, A:D.129, H2O.1, H2O.2 NI.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 7 residues within 4Å: Chain A: T.111 Chain B: T.111 Chain C: L.94, T.96, T.111 Ligands: TRS.6, TRS.10 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.111 TRS.3: 8 residues within 4Å: Chain A: V.108, D.129 Chain B: V.108, D.129 Chain C: V.108, D.129 Ligands: TRS.7, TRS.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.129 TRS.6: 7 residues within 4Å: Chain A: L.94, T.96, T.111 Chain B: T.111 Chain C: T.111 Ligands: TRS.2, TRS.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.96 TRS.7: 8 residues within 4Å: Chain A: V.108, D.129 Chain B: V.108, D.129 Chain C: V.108, D.129 Ligands: TRS.3, TRS.11 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.129 TRS.10: 7 residues within 4Å: Chain A: T.111 Chain B: L.94, T.96, T.111 Chain C: T.111 Ligands: TRS.2, TRS.6 No protein-ligand interaction detected (PLIP) TRS.11: 8 residues within 4Å: Chain A: V.108, D.129 Chain B: V.108, D.129 Chain C: V.108, D.129 Ligands: TRS.3, TRS.7 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tormo-Mas, M.A. et al., Phage Dutpases Control Transfer of Virulence Genes by a Proto-Oncogenic G Protein-Like Mechanism. Mol.Cell (2013)

Release Date

2013-01-30

Peptides

DUTPASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

DUTPASE

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