SMTL ID : 3zf8.1

Crystal structure of Saccharomyces cerevisiae Mnn9 in complex with GDP and Mn.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: P.32, M.33, Q.34, T.35, I.59, T.60, P.61, Q.97, R.119, M.123, N.146, A.147, D.148, Y.189, H.299 Ligands: MN.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:M.33, A:Q.34, A:T.35, A:Q.97, A:R.119, A:N.146, A:A.147 Water bridges: A:Q.34, A:N.146, A:Y.189 Salt bridges: A:R.119, A:H.299 GDP.3: 16 residues within 4Å: Chain B: P.32, M.33, Q.34, T.35, I.59, T.60, P.61, Q.97, R.119, M.123, N.146, A.147, D.148, Y.189, H.299 Ligands: MN.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:M.33, B:Q.34, B:T.35, B:Q.97, B:R.119, B:N.146, B:A.147, B:Y.189 Water bridges: B:Q.34, B:N.146 Salt bridges: B:R.119, B:H.299

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.148, Y.189, H.299 Ligands: GDP.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.148, A:H.299, H2O.6 MN.4: 4 residues within 4Å: Chain B: D.148, Y.189, H.299 Ligands: GDP.3 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.148, B:H.299, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Striebeck, A. et al., Yeast Mnn9 is Both a Priming Glycosyltransferase and an Allosteric Activator of Mannan Biosynthesis. Open Biol. (2013)

Release Date

2013-09-25

Peptides

MANNAN POLYMERASE COMPLEXES SUBUNIT MNN9: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MANNAN POLYMERASE COMPLEXES SUBUNIT MNN9