SMTL ID : 3zg0.2 (1 other biounit)

Crystal structure of ceftaroline acyl-PBP2a from MRSA with non- covalently bound ceftaroline and muramic acid at allosteric site obtained by cocrystallization

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x AI8: Ceftaroline, bound form(Covalent)

AI8.1: 21 residues within 4Å: Chain A: G.376, S.377, K.380, Y.420, E.421, S.436, N.438, Y.493, G.494, Q.495, T.556, H.557, D.560, K.571, S.572, G.573, T.574, A.575, E.576, A.616, S.617 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.377, A:S.436, A:S.436, A:S.436, A:N.438, A:G.494, A:T.574, A:T.574, A:T.574, A:E.576 Water bridges: A:K.571 Salt bridges: A:K.571 pi-Stacking: A:Y.420

4 x CD: CADMIUM ION(Non-covalent)

CD.2: 3 residues within 4Å: Chain A: G.109, H.285 Ligands: CL.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:G.109, A:H.285 CD.3: 4 residues within 4Å: Chain A: H.117, E.119, N.281 Ligands: CL.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.117, A:E.119 CD.4: 1 residues within 4Å: Chain A: H.206 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.206 CD.5: 2 residues within 4Å: Chain A: N.543, D.547 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.547, A:D.547

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: H.117, E.119, T.274, V.276 Ligands: CD.3 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain A: G.109, Q.111, Q.114, A.284, H.285 Ligands: CD.2 Ligand excluded by PLIP

1 x 1W8: Ceftaroline(Non-covalent)

1W8.8: 6 residues within 4Å: Chain A: N.78, Y.79, I.118, E.119, N.120, Y.271 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.120 Hydrogen bonds: A:N.78

1 x MUR: beta-muramic acid(Non-covalent)

MUR.9: 9 residues within 4Å: Chain A: R.125, T.139, E.213, S.214, R.215, V.230, V.251, Q.266, H.267 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.251 Hydrogen bonds: A:R.125, A:T.139, A:E.213, A:R.215, A:Q.266 Water bridges: A:K.122, A:S.123 Salt bridges: A:R.125, A:H.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Otero, L.H. et al., How Allosteric Control of Staphylococcus Aureus Penicillin Binding Protein 2A Enables Methicillin Resistance and Physiological Function. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-10-09

Peptides

PENICILLIN BINDING PROTEIN 2 PRIME: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PENICILLIN BINDING PROTEIN 2 PRIME

Related Entries With Identical Sequence