SMTL ID : 3zgp.1

NMR structure of the catalytic domain from E. faecium L,D- transpeptidase acylated by ertapenem

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x 1RG: (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid(Covalent)

1RG.1: 17 residues within 4Å: Chain A: L.56, K.57, G.58, T.59, N.60, D.61, D.62, G.63, Y.66, W.73, G.80, V.81, G.82, H.84, H.103, G.104, C.105 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.56, A:T.59, A:W.73 Hydrogen bonds: A:T.59, A:T.59, A:Y.66, A:Y.66, A:G.104, A:C.105 Salt bridges: A:H.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lecoq, L. et al., The Structure of Enterococcus Faecium L,D---Transpeptidase Acylated by Ertapenem Provides Insight Into the Inactivation Mechanism. Acs Chem.Biol. (2013)

Release Date

2013-04-24

Peptides

ERFK/YBIS/YCFS/YNHG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ERFK/YBIS/YCFS/YNHG

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