SMTL ID : 3zh8.3 (2 other biounits)

A novel small molecule aPKC inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

monomer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: D.320, I.323 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: M.283 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: Y.18, A.19 Ligands: C58.6 Ligand excluded by PLIP IOD.4: 4 residues within 4Å: Chain A: K.36, F.59, D.149, Y.150 Ligand excluded by PLIP

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: I.232, K.247 Ligand excluded by PLIP

1 x C58: (2S)-3-phenyl-N~1~-[2-(pyridin-4-yl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-yl]propane-1,2-diamine(Non-covalent)

C58.6: 18 residues within 4Å: Chain A: I.13, G.14, R.15, G.16, Y.18, A.19, V.21, A.34, E.86, Y.87, V.88, G.91, D.92, D.135, L.138, T.148, D.149 Ligands: IOD.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.21, A:L.138, A:L.138 Hydrogen bonds: A:V.88, A:D.92, A:D.135, A:T.148

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 6 residues within 4Å: Chain A: M.94, K.133, L.134, D.135, Y.172, E.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.134, A:D.135, A:D.135, A:E.198 EDO.8: 5 residues within 4Å: Chain A: M.152, F.166, C.167, G.168, I.173 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.168 EDO.9: 6 residues within 4Å: Chain A: H.65, L.117, N.120, Y.121, E.124, E.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.120, A:E.124, A:E.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kjaer, S. et al., Adenosine-Binding Motif Mimicry and Cellular Effects of a Thieno[2,3-D]Pyrimidine-Based Chemical Inhibitor of Atypical Protein Kinase C Isozymes. Biochem.J. (2013)

Release Date

2013-02-27

Peptides

PROTEIN KINASE C IOTA TYPE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

PROTEIN KINASE C IOTA TYPE

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