SMTL ID : 3zhf.1

gamma 2 adaptin EAR domain crystal structure with preS1 site1 peptide NPDWDFN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x PRO- ASP- TRP- ASP- PHE- ASN- NH2: LARGE ENVELOPE PROTEIN(Non-covalent)

PRO-ASP-TRP-ASP-PHE-ASN-NH2.1: 12 residues within 4Å: Chain A: Q.53, A.54, A.55, V.56, P.57, K.58, S.59, R.95, K.97, R.99, E.114 Ligands: EDO.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.55, A:P.57, A:K.58, A:K.58, A:R.95, A:K.97, A:K.97, A:R.99 Hydrogen bonds: A:Q.53, A:K.58 Water bridges: A:V.56, A:V.56 Salt bridges: A:K.58

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: K.97, I.112 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.97

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: C.52, Q.53, A.54, L.64 Ligands: PRO-ASP-TRP-ASP-PHE-ASN-NH2.1, PRO-ASP-TRP-ASP-PHE-ASN-NH2.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.54, A:A.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jurgens, M.C. et al., The Hepatitis B Virus Pres1 Domain Hijacks Host Trafficking Proteins by Motif Mimicry. Nat.Chem.Biol. (2013)

Release Date

2013-07-10

Peptides

AP-1 COMPLEX SUBUNIT GAMMA-LIKE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AP-1 COMPLEX SUBUNIT GAMMA-LIKE 2

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