SMTL ID : 3zhg.4 (3 other biounits)

Crystallographic structure of the native mouse SIGN-R1 CRD domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: E.129, S.138, L.142, K.144 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.129, A:S.138 Water bridges: A:N.136, A:N.136 Salt bridges: A:K.144 SO4.2: 4 residues within 4Å: Chain A: N.38, N.67, E.71, K.149 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.38 Water bridges: A:K.149, A:K.149 Salt bridges: A:K.149 SO4.3: 4 residues within 4Å: Chain A: N.67, S.68, D.69, R.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.69 Water bridges: A:E.70 Salt bridges: A:R.109 SO4.5: 4 residues within 4Å: Chain B: E.129, S.138, L.142, K.144 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.129, B:S.138 Water bridges: B:N.136, B:N.136 Salt bridges: B:K.144 SO4.6: 4 residues within 4Å: Chain B: N.38, N.67, E.71, K.149 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.38 Water bridges: B:K.149, B:K.149 Salt bridges: B:K.149 SO4.7: 4 residues within 4Å: Chain B: N.67, S.68, D.69, R.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.69 Water bridges: B:E.70 Salt bridges: B:R.109

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: E.118, N.120, E.125, D.137 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.118, A:E.125, A:D.137, A:D.137, H2O.3 CA.8: 4 residues within 4Å: Chain B: E.118, N.120, E.125, D.137 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.118, B:E.125, B:D.137, B:D.137, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva-Martin, N. et al., Structural Basis for Selective Recognition of Endogenous and Microbial Polysaccharides by Macrophage Receptor Sign-R1. Structure (2014)

Release Date

2014-01-15

Peptides

CD209 ANTIGEN-LIKE PROTEIN B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
D

CD209 ANTIGEN-LIKE PROTEIN B