SMTL ID : 3zj4.1

Neurospora Crassa Catalase-3 expressed in E. coli, triclinic form.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-tetramer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: R.126, V.127, V.128, H.129, R.166, S.168, G.185, F.186, V.200, G.201, N.202, F.207, A.212, F.215, I.275, H.276, F.392, L.408, R.412, S.415, Y.416, T.419, Q.420, R.423 Chain D: L.115, D.119 32 PLIP interactions: 31 interactions with chain A, 1 interactions with chain D, Hydrophobic interactions: A:V.127, A:H.129, A:V.200, A:F.207, A:F.207, A:F.207, A:A.212, A:F.215, A:F.215, A:F.215, A:F.215, A:F.215, A:I.275, A:I.275, A:L.408, A:L.408, A:R.412, A:Y.416, A:Y.416, A:T.419, D:L.115 Hydrogen bonds: A:S.168, A:S.168, A:Q.420 Salt bridges: A:R.126, A:R.126, A:R.166, A:R.423 pi-Stacking: A:H.129, A:F.215 pi-Cation interactions: A:R.412 Metal complexes: A:Y.416 HEM.2: 26 residues within 4Å: Chain B: R.126, V.127, V.128, H.129, R.166, S.168, G.185, V.200, G.201, N.202, F.207, A.212, F.215, I.275, H.276, F.392, L.408, G.411, R.412, S.415, Y.416, T.419, Q.420, R.423 Chain C: L.115, D.119 30 PLIP interactions: 29 interactions with chain B, 1 interactions with chain C, Hydrophobic interactions: B:V.127, B:H.129, B:V.200, B:F.207, B:F.207, B:F.215, B:F.215, B:F.215, B:F.215, B:I.275, B:I.275, B:F.392, B:L.408, B:L.408, B:R.412, B:Y.416, B:Y.416, B:T.419, C:L.115 Hydrogen bonds: B:S.168, B:S.168, B:Q.420 Salt bridges: B:R.126, B:R.166, B:R.423 pi-Stacking: B:H.129, B:F.207, B:F.215 pi-Cation interactions: B:R.412 Metal complexes: B:Y.416 HEM.3: 26 residues within 4Å: Chain B: L.115, D.119 Chain C: R.126, V.127, V.128, H.129, R.166, S.168, G.185, F.186, V.200, G.201, N.202, F.207, A.212, F.215, I.275, H.276, F.392, L.408, R.412, S.415, Y.416, T.419, Q.420, R.423 31 PLIP interactions: 30 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: C:V.127, C:H.129, C:V.200, C:F.207, C:F.207, C:F.207, C:A.212, C:F.215, C:F.215, C:F.215, C:F.215, C:F.215, C:L.408, C:L.408, C:R.412, C:Y.416, C:Y.416, C:T.419, B:L.115 Hydrogen bonds: C:S.168, C:S.168, C:Q.420 Salt bridges: C:R.126, C:R.126, C:R.166, C:R.423 pi-Stacking: C:H.129, C:F.207, C:F.215 pi-Cation interactions: C:R.412 Metal complexes: C:Y.416 HEM.4: 26 residues within 4Å: Chain A: L.115, D.119 Chain D: R.126, V.127, V.128, H.129, R.166, G.185, A.187, V.200, G.201, N.202, F.207, A.212, F.215, I.275, H.276, F.392, L.408, G.411, R.412, S.415, Y.416, T.419, Q.420, R.423 30 PLIP interactions: 29 interactions with chain D, 1 interactions with chain A, Hydrophobic interactions: D:V.127, D:H.129, D:A.187, D:V.200, D:F.207, D:F.207, D:A.212, D:F.215, D:F.215, D:F.215, D:F.215, D:F.215, D:L.408, D:L.408, D:R.412, D:Y.416, D:Y.416, D:T.419, A:L.115 Hydrogen bonds: D:S.168, D:S.168, D:Q.420 Salt bridges: D:R.126, D:R.126, D:R.166, D:R.423 pi-Stacking: D:H.129, D:F.215 pi-Cation interactions: D:R.412 Metal complexes: D:Y.416

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zarate-Romero, A. et al., Conformational Stability and Crystal Packing: Polymorphism in Neurospora Crassa Cat-3. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-07-10

Peptides

CATALASE-3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

CATALASE-3

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