- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.38 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 7 residues within 4Å:- Chain A: G.12, E.13, T.14, E.15, N.16, A.108, D.111
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.12, A:T.14, A:T.14, A:E.15, A:N.16, A:N.16
PO4.3: 5 residues within 4Å:- Chain A: Y.72, V.134, P.135, N.136
- Ligands: GOL.5
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.72, A:Y.72, A:N.136
- Water bridges: A:R.122, A:R.122
PO4.11: 7 residues within 4Å:- Chain B: G.12, E.13, T.14, E.15, N.16, A.108, D.111
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:G.12, B:T.14, B:T.14, B:E.15, B:N.16, B:N.16, B:D.111
PO4.12: 5 residues within 4Å:- Chain B: Y.72, V.134, P.135, N.136
- Ligands: GOL.14
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.72, B:N.136
- Water bridges: B:R.122, B:R.122
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 5 residues within 4Å:- Chain A: R.17, N.21, L.22, E.23, Q.107
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.21, A:L.22, A:E.23
GOL.5: 4 residues within 4Å:- Chain A: R.122, P.135
- Chain B: G.193
- Ligands: PO4.3
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.122, A:R.122, B:G.193
GOL.6: 4 residues within 4Å:- Chain A: Y.73, R.140, Y.141
- Chain B: L.27
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Y.73, A:Y.141
- Water bridges: A:Y.73, A:R.140, B:F.195
GOL.7: 5 residues within 4Å:- Chain A: Y.187, P.188, V.190, Y.192
- Chain B: K.191
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:K.191, A:Y.187
- Water bridges: B:K.191, A:Y.187
GOL.8: 5 residues within 4Å:- Chain A: L.27, E.30
- Chain B: H.67, P.68, H.69
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Water bridges: A:E.30
- Hydrogen bonds: B:H.69
GOL.13: 5 residues within 4Å:- Chain B: R.17, N.21, L.22, E.23, Q.107
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.21, B:L.22, B:E.23
GOL.14: 4 residues within 4Å:- Chain A: G.193
- Chain B: R.122, P.135
- Ligands: PO4.12
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.122, B:R.122, A:G.193
GOL.15: 4 residues within 4Å:- Chain A: L.27
- Chain B: Y.73, R.140, Y.141
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Y.73
- Water bridges: B:Y.73, B:R.140, A:F.195
GOL.16: 5 residues within 4Å:- Chain A: K.191
- Chain B: Y.187, P.188, V.190, Y.192
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Y.187, A:K.191
- Water bridges: A:K.191
GOL.17: 5 residues within 4Å:- Chain A: H.67, P.68, H.69
- Chain B: L.27, E.30
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.69
- 2 x IMD: IMIDAZOLE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pesce, A. et al., Structure and Haem-Distal Site Plasticity in Methanosarcina Acetivorans Protoglobin. Plos One (2013)
- Release Date
- 2013-06-26
- Peptides
- PROTOGLOBIN: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.38 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 2 x IMD: IMIDAZOLE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pesce, A. et al., Structure and Haem-Distal Site Plasticity in Methanosarcina Acetivorans Protoglobin. Plos One (2013)
- Release Date
- 2013-06-26
- Peptides
- PROTOGLOBIN: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A