SMTL ID : 3zmb.1

Native structure of Farnesyl Pyrophosphate Synthase from Pseudomonas aeruginosa PA01, with bound fragment SPB02696.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

3 x 6H6: 3-(2-oxo-1,3-benzoxazol-3(2H)-yl)propanoic acid(Non-covalent)

6H6.1: 8 residues within 4Å: Chain A: I.3, A.4, Q.7, K.45, V.47, L.50, Y.290 Ligands: 6H6.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Q.7, A:V.47, A:L.50, A:Y.290 Water bridges: A:Q.7, A:K.45 Salt bridges: A:K.45 pi-Stacking: A:Y.290 6H6.2: 8 residues within 4Å: Chain A: V.47, R.48, H.77, I.186, I.215, F.219, I.291 Ligands: 6H6.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.186, A:F.219, A:I.291 Water bridges: A:R.48, A:R.48 Salt bridges: A:R.48, A:H.77 pi-Stacking: A:F.219, A:F.219 6H6.4: 7 residues within 4Å: Chain B: I.3, A.4, Q.7, K.45, V.47, L.50, Y.290 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Q.7, B:V.47, B:L.50 Water bridges: B:Q.7, B:Q.7 Salt bridges: B:K.45 pi-Stacking: B:Y.290

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: S.80, L.81, M.154, Q.158, K.181, T.182 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.77 Salt bridges: A:D.84

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain B: R.267, R.289 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidberger, J.W. et al., Structural Characterization of Substrate and Inhibitor Binding to Farnesyl Pyrophosphate Synthase from Pseudomonas Aeruginosa. Acta Crystallogr.,Sect.D (2015)

Release Date

2014-02-26

Peptides

GERANYLTRANSTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GERANYLTRANSTRANSFERASE

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