SMTL ID : 3zmr.2 (1 other biounit)

Bacteroides ovatus GH5 xyloglucanase in complex with a XXXG heptasaccharide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x GLO- BGC- BGC- BGC- XYS- XYS- XYS: alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-D-glucose(Non-functional Binders)

GLO-BGC-BGC-BGC-XYS-XYS-XYS.1: 16 residues within 4Å: Chain A: N.130, V.135, I.136, V.137, C.149, W.150, H.216, W.217, N.261, E.262, H.336, Y.338, I.345, E.395, W.437 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.216, A:N.261, A:H.336, A:E.395, A:E.395 Water bridges: A:E.262, A:E.262

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: H.454, N.455 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.454 Water bridges: A:H.454 EDO.3: 5 residues within 4Å: Chain A: N.310, T.311, D.312, H.336, Y.338 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.312 Water bridges: A:Y.338 EDO.4: 4 residues within 4Å: Chain A: I.345, M.346, P.347, T.399 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.346 Water bridges: A:T.399, A:T.399 EDO.5: 6 residues within 4Å: Chain A: N.107, M.110, R.111, D.112, Y.301, R.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.112, A:R.330 Water bridges: A:R.111, A:Y.301 EDO.6: 7 residues within 4Å: Chain A: W.150, G.151, N.152, A.439, G.440 Ligands: GLO-BGC-BGC-BGC-XYS-XYS-XYS.1, GLO-BGC-BGC-BGC-XYS-XYS-XYS.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.439 EDO.7: 5 residues within 4Å: Chain A: E.18, E.70, K.90, S.92, L.324 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.18, A:E.70 Water bridges: A:S.92 EDO.8: 4 residues within 4Å: Chain A: Y.187, W.221, L.233, R.236 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.187, A:R.236, A:R.236 Water bridges: A:Y.187, A:R.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larsbrink, J. et al., A Discrete Genetic Locus Confers Xyloglucan Metabolism in Select Human Gut Bacteroidetes. Nature (2014)

Release Date

2014-01-15

Peptides

CELLULASE (GLYCOSYL HYDROLASE FAMILY 5): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

CELLULASE (GLYCOSYL HYDROLASE FAMILY 5)

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