SMTL ID : 3zn1.1

LSD1-CoREST in complex with PRLYLV peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PRO- ARG- LEU- TYR- LEU- VAL: PEPTIDE(Non-covalent)

PRO-ARG-LEU-TYR-LEU-VAL.1: 19 residues within 4Å: Chain A: L.406, N.555, L.556, F.558, A.559, N.560, W.572, D.573, D.575, D.576, E.579, H.584, L.697, L.713, W.715, Y.781, A.829, T.830 Ligands: FAD.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:N.555, A:L.556, A:A.559, A:W.572, A:W.572, A:E.579, A:L.713, A:W.715, A:T.830 Hydrogen bonds: A:N.555, A:N.555, A:N.560 Salt bridges: A:D.573, A:D.576

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 37 residues within 4Å: Chain A: G.305, G.307, V.308, S.309, L.327, E.328, A.329, R.330, G.334, G.335, R.336, V.337, L.349, G.350, A.351, M.352, V.353, T.608, A.609, V.610, T.644, L.645, P.646, V.657, L.679, K.681, W.771, W.776, S.780, Y.781, G.820, E.821, A.829, T.830, V.831, A.834 Ligands: PRO-ARG-LEU-TYR-LEU-VAL.1 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.679 Hydrogen bonds: A:S.306, A:G.307, A:V.308, A:S.309, A:S.309, A:S.309, A:A.329, A:R.330, A:G.334, A:R.336, A:A.351, A:M.352, A:V.353, A:V.353, A:V.610, A:V.610, A:E.821, A:V.831 Salt bridges: A:R.336, A:R.336 pi-Stacking: A:Y.781

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tortorici, M. et al., Protein Recognition by Small Peptide Reversible Inhibitors of the Chromatin-Modifying Lsd1/Corest Lysine Demethylase. Acs Chem.Biol. (2013)

Release Date

2013-06-12

Peptides

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A: A
REST COREPRESSOR 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A

REST COREPRESSOR 1

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