SMTL ID : 3zo0.1

Mouse IgG2a in complex with mouse TRIM21 PRYSPRY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL.1: 16 residues within 4Å: Chain A: F.5, F.7, P.8, P.9, K.10, I.22, T.24, V.28, D.29, D.59, Y.60, N.61, R.65 Ligands: MAN.2, FUC.3, MAN.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.7, A:K.10, A:I.22, A:I.22, A:T.24, A:K.10 Water bridges: A:K.10, A:K.10, A:T.24, A:T.24 NAG-NAG-BMA-MAN-NAG-GAL.4: 16 residues within 4Å: Chain C: F.5, F.7, P.8, P.9, K.10, I.22, T.24, V.28, D.29, D.59, Y.60, N.61, R.65 Ligands: MAN.2, MAN.5, FUC.6 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:F.7, C:K.10, C:I.22, C:I.22, C:T.24, C:T.24, C:K.10 Water bridges: C:K.10, C:K.10, C:T.24

2 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.2: 4 residues within 4Å: Chain A: F.5 Ligands: NAG-NAG-BMA-MAN-NAG-GAL.1, NAG-NAG-BMA-MAN-NAG-GAL.4, FUC.6 No protein-ligand interaction detected (PLIP) MAN.5: 4 residues within 4Å: Chain C: F.5 Ligands: NAG-NAG-BMA-MAN-NAG-GAL.1, FUC.3, NAG-NAG-BMA-MAN-NAG-GAL.4 No protein-ligand interaction detected (PLIP)

2 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.3: 4 residues within 4Å: Chain A: Y.60 Ligands: NAG-NAG-BMA-MAN-NAG-GAL.1, NAG-NAG-BMA-MAN-NAG-GAL.1, MAN.5 No protein-ligand interaction detected (PLIP) FUC.6: 4 residues within 4Å: Chain C: Y.60 Ligands: MAN.2, NAG-NAG-BMA-MAN-NAG-GAL.4, NAG-NAG-BMA-MAN-NAG-GAL.4 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Y.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keeble, A.H. et al., Trim21 is an Igg Receptor that is Structurally, Thermodynamically, and Kinetically Conserved. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2013-05-22

Peptides

IG GAMMA-2A CHAIN C REGION, A ALLELE: AC
E3 UBIQUITIN-PROTEIN LIGASE TRIM21: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

IG GAMMA-2A CHAIN C REGION, A ALLELE

E3 UBIQUITIN-PROTEIN LIGASE TRIM21