SMTL ID : 3zo7.1

Crystal structure of ClcFE27A with substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-10-mer

Ligands

10 x K6H: (2S)-2-CHLORANYL-2-[(2R)-5-OXIDANYLIDENE-2H-FURAN-2-YL]ETHANOIC ACID(Non-covalent)

K6H.1: 16 residues within 4Å: Chain A: M.7, V.9, A.27, K.28, S.31, W.40, L.43, R.45, Y.50, G.51, N.52, F.73, L.77 Chain D: H.87, A.89 Ligands: CL.2 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain A Salt bridges: D:H.87, D:H.87, A:R.45 Hydrophobic interactions: A:W.40 Hydrogen bonds: A:N.52 Water bridges: A:K.28 K6H.4: 16 residues within 4Å: Chain B: M.7, V.9, A.27, K.28, S.31, W.40, L.43, R.45, Y.50, G.51, N.52, F.73, L.77 Chain C: H.87, A.89 Ligands: CL.5 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:W.40 Hydrogen bonds: B:N.52 Water bridges: B:K.28, B:R.45 Salt bridges: B:R.45, C:H.87, C:H.87 K6H.10: 16 residues within 4Å: Chain B: H.87, A.89 Chain C: M.7, V.9, A.27, K.28, S.31, W.40, L.43, R.45, Y.50, G.51, N.52, F.73, L.77 Ligands: CL.8 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:N.52 Salt bridges: C:R.45, B:H.87, B:H.87 K6H.11: 16 residues within 4Å: Chain A: H.87, A.89 Chain D: M.7, V.9, A.27, K.28, S.31, W.40, L.43, R.45, Y.50, G.51, N.52, F.73, L.77 Ligands: CL.12 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:W.40 Hydrogen bonds: D:N.52 Salt bridges: D:R.45, A:H.87, A:H.87 K6H.13: 16 residues within 4Å: Chain E: M.7, V.9, A.27, K.28, S.31, W.40, L.43, R.45, Y.50, G.51, N.52, F.73, L.77 Chain G: H.87, A.89 Ligands: CL.14 5 PLIP interactions: 3 interactions with chain E, 2 interactions with chain G Hydrophobic interactions: E:W.40 Hydrogen bonds: E:N.52 Salt bridges: E:R.45, G:H.87, G:H.87 K6H.16: 16 residues within 4Å: Chain F: M.7, V.9, A.27, K.28, S.31, W.40, L.43, R.45, Y.50, G.51, N.52, F.73, L.77 Chain I: H.87, A.89 Ligands: CL.15 5 PLIP interactions: 3 interactions with chain F, 2 interactions with chain I Hydrophobic interactions: F:W.40 Hydrogen bonds: F:N.52 Salt bridges: F:R.45, I:H.87, I:H.87 K6H.17: 16 residues within 4Å: Chain E: H.87, A.89 Chain G: M.7, V.9, A.27, K.28, S.31, W.40, L.43, R.45, Y.50, G.51, N.52, F.73, L.77 Ligands: CL.18 6 PLIP interactions: 4 interactions with chain G, 2 interactions with chain E Hydrophobic interactions: G:W.40 Hydrogen bonds: G:N.52 Water bridges: G:K.28 Salt bridges: G:R.45, E:H.87, E:H.87 K6H.19: 16 residues within 4Å: Chain H: M.7, V.9, A.27, K.28, S.31, W.40, L.43, R.45, Y.50, G.51, N.52, F.73, L.77 Chain J: H.87, A.89 Ligands: CL.20 6 PLIP interactions: 4 interactions with chain H, 2 interactions with chain J Hydrophobic interactions: H:W.40 Hydrogen bonds: H:N.52 Water bridges: H:K.28 Salt bridges: H:R.45, J:H.87, J:H.87 K6H.22: 15 residues within 4Å: Chain F: H.87, A.89 Chain I: M.7, V.9, A.27, K.28, S.31, W.40, L.43, R.45, Y.50, N.52, F.73, L.77 Ligands: CL.21 5 PLIP interactions: 2 interactions with chain F, 3 interactions with chain I Salt bridges: F:H.87, F:H.87, I:R.45 Hydrophobic interactions: I:W.40 Hydrogen bonds: I:N.52 K6H.23: 16 residues within 4Å: Chain H: H.87, A.89 Chain J: M.7, V.9, A.27, K.28, S.31, W.40, L.43, R.45, Y.50, G.51, N.52, F.73, L.77 Ligands: CL.24 7 PLIP interactions: 5 interactions with chain J, 2 interactions with chain H Hydrophobic interactions: J:W.40 Hydrogen bonds: J:N.52 Water bridges: J:K.28, J:Y.50 Salt bridges: J:R.45, H:H.87, H:H.87

14 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: A.27, L.71, P.72, F.73 Ligands: K6H.1 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: H.65, W.69 Chain B: P.88 Chain C: R.45 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain B: A.27, L.71, P.72, F.73 Ligands: K6H.4 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: M.1 Chain B: S.60, H.61, D.62 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: R.45 Chain C: P.88 Chain G: H.65, W.69 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain C: A.27, L.71, P.72, F.73 Ligands: K6H.10 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain C: S.60, H.61, D.62 Chain G: M.1 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain D: A.27, L.71, P.72, F.73 Ligands: K6H.11 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain E: A.27, L.71, P.72, F.73 Ligands: K6H.13 Ligand excluded by PLIP CL.15: 5 residues within 4Å: Chain F: A.27, L.71, P.72, F.73 Ligands: K6H.16 Ligand excluded by PLIP CL.18: 6 residues within 4Å: Chain G: A.27, L.71, P.72, F.73, L.77 Ligands: K6H.17 Ligand excluded by PLIP CL.20: 5 residues within 4Å: Chain H: A.27, L.71, P.72, F.73 Ligands: K6H.19 Ligand excluded by PLIP CL.21: 5 residues within 4Å: Chain I: A.27, L.71, P.72, F.73 Ligands: K6H.22 Ligand excluded by PLIP CL.24: 6 residues within 4Å: Chain J: A.27, L.71, P.72, F.73, L.77 Ligands: K6H.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roth, C. et al., Crystal Structure and Catalytic Mechanism of Chloromuconolactone Dehalogenase Clcf from Rhodococcus Opacus 1Cp. Mol.Microbiol. (2013)

Release Date

2013-03-06

Peptides

5-CHLOROMUCONOLACTONE DEHALOGENASE: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

5-CHLOROMUCONOLACTONE DEHALOGENASE