- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.4: 28 residues within 4Å:- Chain A: N.55, T.57, V.58, I.61, Y.62, D.86, E.88, K.91, G.119, G.120, V.121, D.124, T.144, T.145, M.147, D.151, S.152, K.157, K.166, N.167, T.184, T.187, L.188, E.192, K.241, H.279
- Ligands: PO4.2, GLY.7
20 PLIP interactions:19 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:D.151
- Hydrogen bonds: A:N.55, A:Y.62, A:Y.62, A:D.86, A:E.88, A:G.120, A:V.121, A:D.124, A:T.145, A:T.145, A:K.166, A:K.166, A:N.167, A:K.241, G.7
- Water bridges: A:D.86, A:G.119, A:G.156, A:K.157
NAD.12: 27 residues within 4Å:- Chain B: N.55, T.57, V.58, Y.62, D.86, E.88, K.91, G.119, G.120, V.121, D.124, T.144, T.145, M.147, D.151, S.152, K.157, K.166, N.167, T.184, T.187, L.188, E.192, K.241, H.279
- Ligands: PO4.9, GLY.15
21 PLIP interactions:19 interactions with chain B, 2 Ligand-Ligand interactions- Hydrogen bonds: B:N.55, B:T.57, B:D.86, B:E.88, B:K.91, B:G.120, B:V.121, B:D.124, B:T.144, B:T.144, B:K.166, B:K.166, B:N.167, B:T.187, B:K.241, G.15, G.15
- Water bridges: B:D.86, B:G.119, B:G.119, B:K.157
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.5: 5 residues within 4Å:- Chain A: A.335, V.340, G.343
- Chain B: R.49, R.107
1 PLIP interactions:1 interactions with chain A- Water bridges: A:G.343
PEG.6: 5 residues within 4Å:- Chain A: L.164, M.329, S.332
- Chain B: I.104, E.105
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:S.332, B:E.105
- 2 x GLY: GLYCINE(Non-covalent)
GLY.7: 8 residues within 4Å:- Chain A: D.151, K.157, K.241, R.255, L.258
- Ligands: PO4.1, PO4.2, NAD.4
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:K.241, A:K.241, A:R.255
- Water bridges: A:R.255
- Salt bridges: A:K.157, A:K.241, A:R.255
GLY.15: 8 residues within 4Å:- Chain B: D.151, K.157, K.241, R.255, L.258
- Ligands: PO4.8, PO4.9, NAD.12
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.151
- Water bridges: B:S.152, B:K.241, B:L.258
- Salt bridges: B:K.157, B:K.241, B:R.255
- 1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mittelstadt, G. et al., Biochemical and structural characterisation of dehydroquinate synthase from the New Zealand kiwifruit Actinidia chinensis. Arch. Biochem. Biophys. (2013)
- Release Date
- 2013-08-21
- Peptides
- 3-DEHYDROQUINATE SYNTHASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x GLY: GLYCINE(Non-covalent)
- 1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mittelstadt, G. et al., Biochemical and structural characterisation of dehydroquinate synthase from the New Zealand kiwifruit Actinidia chinensis. Arch. Biochem. Biophys. (2013)
- Release Date
- 2013-08-21
- Peptides
- 3-DEHYDROQUINATE SYNTHASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B