SMTL ID : 3zpc.1

Acinetobacter baumannii RibD, form 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.75, C.100, C.109 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.75, A:C.100, A:C.109, H2O.1 ZN.5: 3 residues within 4Å: Chain B: H.75, C.100, C.109 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.75, B:C.100, B:C.109, H2O.6

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: K.158, L.159, N.160, Q.161, G.162, R.175, I.211, D.307 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.211 Hydrogen bonds: A:K.158, A:Q.161, A:G.162 Salt bridges: A:R.175

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: R.209, C.227, Q.228, L.229, R.232 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.228, A:L.229, A:N.230 Water bridges: A:Q.228 Salt bridges: A:R.209, A:R.232 PO4.4: 6 residues within 4Å: Chain A: N.49, H.75, H.102, G.104, R.105, T.106 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.49, A:G.104, A:R.105, A:T.106 Salt bridges: A:H.75, A:H.102 PO4.6: 6 residues within 4Å: Chain B: R.202, R.209, C.227, Q.228, L.229, R.232 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.228, B:L.229, B:N.230 Salt bridges: B:R.202, B:R.209, B:R.232 PO4.7: 5 residues within 4Å: Chain B: N.49, H.75, G.104, R.105, T.106 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.49, B:N.49, B:G.104, B:R.105, B:T.106, B:T.106 Salt bridges: B:H.75, B:R.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dawson, A. et al., Structure of Diaminohydroxyphosphoribosylaminopyrimidine Deaminase/5-Amino-6-(5-Phosphoribosylamino)Uracil Reductase from Acinetobacter Baumannii. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-03-27

Peptides

RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD

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