SMTL ID : 3zq9.1

Structure of a Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x NOY: (2R,3S,4R,5R)-5-(HYDROXYMETHYL)PIPERIDINE-2,3,4-TRIOL(Non-covalent)

NOY.1: 10 residues within 4Å: Chain A: G.47, N.48, N.186, E.187, Y.286, E.358, W.391, L.393 Ligands: BGC.2, EDO.9 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.48, A:N.48, A:N.186, A:E.358 Water bridges: A:N.48, A:N.48

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.2: 6 residues within 4Å: Chain A: G.47, N.48, R.49, D.65, W.391 Ligands: NOY.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.48, A:R.49 Water bridges: A:D.65

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: E.56, D.151, D.154, Y.156 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.56, A:D.151, A:D.154, A:Y.156, H2O.5

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: E.187, P.188, A.189, L.233, Y.234, A.238 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: P.25, A.41, R.409 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.409, A:R.409 Salt bridges: A:R.409 SO4.6: 3 residues within 4Å: Chain A: Q.147, L.148, Q.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.148, A:Q.149, A:Q.149

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 6 residues within 4Å: Chain A: N.31, R.43, R.44, L.45, N.77, F.95 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.33, A:N.77 Water bridges: A:D.33, A:R.43 EDO.8: 7 residues within 4Å: Chain A: N.72, C.75, S.76, L.80, T.81, Q.82, C.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.72 EDO.9: 4 residues within 4Å: Chain A: Y.286, R.295, L.393 Ligands: NOY.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.295, A:R.295 EDO.10: 2 residues within 4Å: Chain A: D.395, G.396 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.392, A:G.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ariza, A. et al., Structure and Activity of Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44. J.Biol.Chem. (2011)

Release Date

2011-06-22

Peptides

XYLOGLUCANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

XYLOGLUCANASE

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