SMTL ID : 3zqk.1 (2 other biounits)

Von Willebrand Factor A2 domain with calcium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: L.175, L.189 1 PLIP interactions: 1 interactions with chain A Water bridges: A:P.173 GOL.2: 4 residues within 4Å: Chain A: F.115, D.121, N.127, D.147 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.115, A:N.127 Water bridges: A:V.117

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: D.23, D.121, R.122, A.125, N.127 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.23, A:D.121, A:R.122, A:A.125, H2O.5

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain A: E.36, A.37, N.40, R.94 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:E.36, A:A.37 Hydrogen bonds: A:E.36, A:N.40 Water bridges: A:E.36, A:E.36, A:E.36, A:K.43, A:R.94, A:R.94, A:R.94, A:R.94, A:R.94 NAG.5: 2 residues within 4Å: Chain A: Y.69, N.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jakobi, A.J. et al., Calcium Modulates Force Sensing by the Von Willebrand Factor A2 Domain. Nat.Commun. (2011)

Release Date

2011-07-27

Peptides

VON WILLEBRAND FACTOR: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VON WILLEBRAND FACTOR

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