SMTL ID : 3zqs.1

Human FANCL central domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x PRO: PROLINE(Non-covalent)

PRO.1: 4 residues within 4Å: Chain A: P.62, S.114, T.116, E.131 6 PLIP interactions: 3 Ligand-Ligand interactions, 3 interactions with chain A Hydrogen bonds: P.1, P.1, P.1, A:T.116, A:E.131 Water bridges: A:T.116 PRO.9: 2 residues within 4Å: Chain A: W.104, A.186 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:W.104 PRO.15: 4 residues within 4Å: Chain C: P.62, S.114, T.116, E.131 8 PLIP interactions: 5 interactions with chain C, 3 Ligand-Ligand interactions Hydrogen bonds: C:E.131, P.15, P.15, P.15 Water bridges: C:T.116, C:T.116, C:T.116, C:E.131 PRO.23: 2 residues within 4Å: Chain C: W.104, A.186 1 PLIP interactions: 1 interactions with chain C, Hydrophobic interactions: C:W.104

20 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.2: 7 residues within 4Å: Chain A: D.56, Y.57, P.64, F.65, C.66 Ligands: P6G.5, P6G.8 Ligand excluded by PLIP P6G.3: 4 residues within 4Å: Chain A: G.11, T.12 Chain B: A.21 Ligands: P6G.6 Ligand excluded by PLIP P6G.4: 4 residues within 4Å: Chain A: L.83, A.84, E.87, S.88 Ligand excluded by PLIP P6G.5: 5 residues within 4Å: Chain A: F.58, V.59, P.64, F.65 Ligands: P6G.2 Ligand excluded by PLIP P6G.6: 10 residues within 4Å: Chain A: I.7, E.8, G.11, T.12, W.15 Chain B: A.21, D.22, T.23, F.25 Ligands: P6G.3 Ligand excluded by PLIP P6G.7: 2 residues within 4Å: Chain A: S.88, R.135 Ligand excluded by PLIP P6G.8: 5 residues within 4Å: Chain A: P.64, F.65, C.66, R.135 Ligands: P6G.2 Ligand excluded by PLIP P6G.12: 8 residues within 4Å: Chain B: E.107, P.108, A.117, R.118, R.119, N.129, E.131, E.142 Ligand excluded by PLIP P6G.13: 9 residues within 4Å: Chain B: V.63, S.88, L.89, A.91, D.94, P.134, R.135, P.137, T.138 Ligand excluded by PLIP P6G.14: 7 residues within 4Å: Chain A: D.16, K.31 Chain B: V.19, Y.20, K.29, K.31, E.39 Ligand excluded by PLIP P6G.16: 7 residues within 4Å: Chain C: D.56, Y.57, P.64, F.65, C.66 Ligands: P6G.19, P6G.22 Ligand excluded by PLIP P6G.17: 4 residues within 4Å: Chain C: G.11, T.12 Chain D: A.21 Ligands: P6G.20 Ligand excluded by PLIP P6G.18: 4 residues within 4Å: Chain C: L.83, A.84, E.87, S.88 Ligand excluded by PLIP P6G.19: 5 residues within 4Å: Chain C: F.58, V.59, P.64, F.65 Ligands: P6G.16 Ligand excluded by PLIP P6G.20: 10 residues within 4Å: Chain C: I.7, E.8, G.11, T.12, W.15 Chain D: A.21, D.22, T.23, F.25 Ligands: P6G.17 Ligand excluded by PLIP P6G.21: 2 residues within 4Å: Chain C: S.88, R.135 Ligand excluded by PLIP P6G.22: 5 residues within 4Å: Chain C: P.64, F.65, C.66, R.135 Ligands: P6G.16 Ligand excluded by PLIP P6G.26: 8 residues within 4Å: Chain D: E.107, P.108, A.117, R.118, R.119, N.129, E.131, E.142 Ligand excluded by PLIP P6G.27: 9 residues within 4Å: Chain D: V.63, S.88, L.89, A.91, D.94, P.134, R.135, P.137, T.138 Ligand excluded by PLIP P6G.28: 7 residues within 4Å: Chain C: D.16, K.31 Chain D: V.19, Y.20, K.29, K.31, E.39 Ligand excluded by PLIP

4 x NA: SODIUM ION(Non-functional Binders)

NA.10: 6 residues within 4Å: Chain A: W.15, D.16, L.18 Chain B: W.15, D.16, L.18 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.18, B:L.18, B:L.18 NA.11: 2 residues within 4Å: Chain B: H.164, W.166 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.164 NA.24: 6 residues within 4Å: Chain C: W.15, D.16, L.18 Chain D: W.15, D.16, L.18 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:L.18, C:L.18, C:L.18 NA.25: 2 residues within 4Å: Chain D: H.164, W.166 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hodson, C. et al., Structural Analysis of Human Fancl, the E3 Ligase in the Fanconi Anemia Pathway. J.Biol.Chem. (2011)

Release Date

2011-07-20

Peptides

E3 UBIQUITIN-PROTEIN LIGASE FANCL: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E3 UBIQUITIN-PROTEIN LIGASE FANCL