SMTL ID : 3zr6.1

STRUCTURE OF GALACTOCEREBROSIDASE FROM MOUSE IN COMPLEX WITH GALACTOSE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: D.347, L.349, G.350, N.351, L.441 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 7 residues within 4Å: Chain A: T.529, N.530, K.608, G.609, Y.629, A.655, R.656 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: R.25, K.236, I.269, N.272 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.25, A:K.236 NAG.4: 3 residues within 4Å: Chain A: Y.373, N.375, S.377 No protein-ligand interaction detected (PLIP)

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.5: 12 residues within 4Å: Chain A: G.36, T.80, T.81, W.123, N.169, E.170, Y.226, E.246, S.249, W.279, Y.291, R.368 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.81, A:T.81, A:W.123, A:N.169, A:E.170, A:E.170, A:S.249, A:R.368, A:R.368 Salt bridges: A:R.368

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 4 residues within 4Å: Chain A: D.465, N.467, F.499, D.648 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:F.499, A:D.648, A:D.648, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deane, J.E. et al., Insights Into Krabbe Disease from Structures of Galactocerebrosidase. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-09-28

Peptides

GALACTOCEREBROSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GALACTOCEREBROSIDASE

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