- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 4 residues within 4Å:- Chain A: T.48, G.49, Q.50
- Ligands: SO4.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.49, A:Q.50
EDO.11: 5 residues within 4Å:- Chain B: T.48, G.49, Q.50
- Ligands: SO4.9, EDO.12
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.49, B:Q.50
EDO.12: 8 residues within 4Å:- Chain B: E.47, T.48, G.49, S.74, N.75, S.78
- Ligands: SO4.9, EDO.11
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.49, B:N.75
- 2 x OM1: (4-CARBOXY-1,3-BENZODIOXOL-5-YL)METHYL-[[2-[(4-METHOXYPHENYL)METHYLCARBAMOYL]PHENYL]METHYL]AZANIUM(Non-covalent)
OM1.6: 14 residues within 4Å:- Chain A: D.122, Q.123, A.124, E.125, H.126, T.129, M.133
- Chain B: Q.50, A.53, Y.54, L.57, T.80, A.83, A.84
9 PLIP interactions:3 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:Q.50, B:A.83
- Hydrogen bonds: B:Q.50, A:Q.123, A:E.125, A:H.126, A:T.129, A:T.129
- Salt bridges: A:H.126
OM1.13: 14 residues within 4Å:- Chain A: Q.50, A.53, Y.54, L.57, T.80, A.83, A.84
- Chain B: D.122, Q.123, A.124, E.125, H.126, T.129, M.133
10 PLIP interactions:7 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:Q.123, B:E.125, B:H.126, B:H.126, B:T.129, A:Q.50
- Water bridges: B:E.125
- Salt bridges: B:H.126
- Hydrophobic interactions: A:Q.50, A:A.83
- 1 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Small Molecule Inhibitors of the Ledgf Site of Human Immunodeficiency Virus Integrase Identified by Fragment Screening and Structure Based Design. Plos One (2012)
- Release Date
- 2012-07-11
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x OM1: (4-CARBOXY-1,3-BENZODIOXOL-5-YL)METHYL-[[2-[(4-METHOXYPHENYL)METHYLCARBAMOYL]PHENYL]METHYL]AZANIUM(Non-covalent)
- 1 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Small Molecule Inhibitors of the Ledgf Site of Human Immunodeficiency Virus Integrase Identified by Fragment Screening and Structure Based Design. Plos One (2012)
- Release Date
- 2012-07-11
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B