SMTL ID : 3zu4.1

Structure of the enoyl-ACP reductase FabV from Yersinia pestis with the cofactor NADH and the 2-pyridone inhibitor PT172

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 30 residues within 4Å: Chain A: G.54, A.55, S.56, T.57, G.58, Y.59, F.79, F.80, E.81, G.116, D.117, A.118, F.119, S.144, L.145, A.146, S.147, M.202, F.229, T.230, Y.231, K.250, L.277, K.278, A.279, V.280, S.282, Q.283 Ligands: ZU4.2, NA.3 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:Y.59, A:Y.231, A:Y.231 Hydrogen bonds: A:G.54, A:S.56, A:S.56, A:T.57, A:T.57, A:Y.59, A:F.80, A:E.81, A:D.117, A:A.118, A:L.145, A:A.146, A:K.250, A:V.280, A:V.280, A:S.282, A:Q.283 Water bridges: A:L.145, A:S.147, A:S.147, A:S.282, A:Q.283

1 x ZU4: 1-(2-CHLOROBENZYL)-4-HEXYLPYRIDIN-2(1H)-ONE(Non-covalent)

ZU4.2: 10 residues within 4Å: Chain A: A.146, M.202, Y.231, T.237, Y.241, I.246, A.279, M.290, M.291 Ligands: NAI.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.231, A:Y.231, A:Y.231, A:T.237, A:Y.241, A:Y.241, A:I.246, A:A.279, A:M.291

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: G.54, T.57, Y.59, G.60, S.144 Ligands: NAI.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.54, A:G.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirschbeck, M.W. et al., Structure of the Yersinia Pestis Fabv Enoyl-Acp Reductase and its Interaction with Two 2-Pyridone Inhibitors. Structure (2012)

Release Date

2012-01-18

Peptides

PUTATIVE REDUCTASE YPO4104/Y4119/YP_4011: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PUTATIVE REDUCTASE YPO4104/Y4119/YP_4011

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