SMTL ID : 3zuh.1

Negative stain EM Map of the AAA protein CbbX, a red-type Rubisco activase from R. sphaeroides

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 21.00 Å

Oligo State

homo-hexamer

Ligands

6 x RUB: RIBULOSE-1,5-DIPHOSPHATE(Post Translational Modification)

RUB.1: 8 residues within 4Å: Chain A: R.232, S.243, N.246, R.250, R.254, S.283, R.284, G.289 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.246, A:R.284, A:R.284, A:V.285, A:G.289 Salt bridges: A:R.232, A:R.250, A:R.254 RUB.3: 8 residues within 4Å: Chain B: R.232, S.243, N.246, R.250, R.254, S.283, R.284, G.289 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.246, B:R.284, B:R.284, B:V.285, B:G.289 Salt bridges: B:R.232, B:R.250, B:R.254 RUB.5: 8 residues within 4Å: Chain C: R.232, S.243, N.246, R.250, R.254, S.283, R.284, G.289 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:N.246, C:R.284, C:R.284, C:V.285, C:G.289 Salt bridges: C:R.232, C:R.250, C:R.254 RUB.7: 8 residues within 4Å: Chain D: R.232, S.243, N.246, R.250, R.254, S.283, R.284, G.289 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:N.246, D:R.284, D:R.284, D:V.285, D:G.289 Salt bridges: D:R.232, D:R.250, D:R.254 RUB.9: 8 residues within 4Å: Chain E: R.232, S.243, N.246, R.250, R.254, S.283, R.284, G.289 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:N.246, E:R.284, E:R.284, E:V.285, E:G.289 Salt bridges: E:R.232, E:R.250, E:R.254 RUB.11: 8 residues within 4Å: Chain F: R.232, S.243, N.246, R.250, R.254, S.283, R.284, G.289 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:N.246, F:R.284, F:R.284, F:V.285, F:G.289 Salt bridges: F:R.232, F:R.250, F:R.254

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.2: 11 residues within 4Å: Chain A: L.26, I.27, L.29, N.68, P.69, G.70, T.71, G.72, K.73, T.74, D.212 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:I.27, A:G.70, A:T.71, A:G.72, A:K.73, A:T.74 Salt bridges: A:K.73, A:K.73 pi-Stacking: A:H.208 ADP.4: 12 residues within 4Å: Chain B: L.26, I.27, L.29, N.68, P.69, G.70, T.71, G.72, K.73, T.74, T.75, D.212 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:I.27, B:G.70, B:T.71, B:T.71, B:K.73, B:T.74, B:T.74, B:T.75 Salt bridges: B:K.73 pi-Stacking: B:H.208 ADP.6: 12 residues within 4Å: Chain C: L.26, I.27, L.29, N.68, P.69, G.70, T.71, G.72, K.73, T.74, T.75, D.212 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:I.27, C:G.70, C:T.71, C:K.73, C:T.74, C:T.75 Salt bridges: C:K.73, C:K.73 pi-Stacking: C:H.208 ADP.8: 11 residues within 4Å: Chain D: L.26, I.27, L.29, N.68, P.69, G.70, T.71, G.72, K.73, T.74, D.212 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:I.27, D:G.70, D:T.71, D:G.72, D:K.73, D:T.74 Salt bridges: D:K.73, D:K.73 pi-Stacking: D:H.208 ADP.10: 12 residues within 4Å: Chain E: L.26, I.27, L.29, N.68, P.69, G.70, T.71, G.72, K.73, T.74, T.75, D.212 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:I.27, E:G.70, E:T.71, E:T.71, E:K.73, E:T.74, E:T.74, E:T.75 Salt bridges: E:K.73 pi-Stacking: E:H.208 ADP.12: 12 residues within 4Å: Chain F: L.26, I.27, L.29, N.68, P.69, G.70, T.71, G.72, K.73, T.74, T.75, D.212 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:I.27, F:G.70, F:T.71, F:K.73, F:T.74, F:T.75 Salt bridges: F:K.73, F:K.73 pi-Stacking: F:H.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller-Cajar, O. et al., Structure and Function of the Aaa+ Protein Cbbx, a Red-Type Rubisco Activase. Nature (2011)

Release Date

2011-11-09

Peptides

PROTEIN CBBX: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

PROTEIN CBBX