- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x RDF: N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN(Non-covalent)
- 15 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 4 residues within 4Å:- Chain A: T.159, T.284, A.285
- Ligands: PEG.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.159
PEG.4: 7 residues within 4Å:- Chain A: Q.189, S.190, G.191, I.192, H.249, R.255, R.326
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:Q.189, A:S.190, A:G.191, A:I.192, A:H.249, A:R.255, A:R.326
- Water bridges: A:R.255
PEG.5: 8 residues within 4Å:- Chain A: S.198, D.202, Q.204, H.205, Q.589, I.650, L.653, A.654
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.198, A:S.198, A:H.205
PEG.6: 4 residues within 4Å:- Chain A: Q.612, V.672, A.674, N.699
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.612, A:D.673, A:A.674
PEG.7: 4 residues within 4Å:- Chain A: D.581, H.582, P.583, G.584
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.584
PEG.8: 5 residues within 4Å:- Chain A: T.159, R.162, A.163, A.461
- Ligands: PEG.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.159, A:R.162, A:Q.457
PEG.9: 1 residues within 4Å:- Chain A: D.51
No protein-ligand interaction detected (PLIP)PEG.10: 8 residues within 4Å:- Chain A: D.174, T.175, S.177, H.186, N.492, P.493, G.494, Y.542
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.175, A:H.186, A:G.494
PEG.11: 8 residues within 4Å:- Chain A: K.390, D.394, A.431, K.432, V.433, Y.435, I.437, W.480
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.390, A:D.394, A:V.433, A:Y.435
PEG.12: 6 residues within 4Å:- Chain A: A.40, I.41, P.42, S.43, I.623, D.624
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.43, A:S.43, A:D.624
- Water bridges: A:G.44
PEG.13: 7 residues within 4Å:- Chain A: D.58, D.59, R.577, E.662, F.663, N.666, L.687
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.58, A:N.666
PEG.14: 6 residues within 4Å:- Chain A: V.252, R.255, R.256, F.592
- Ligands: ACT.31, SO4.34
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.255
PEG.15: 5 residues within 4Å:- Chain A: K.428, D.543, G.544, D.545, V.549
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.543, A:G.544
PEG.16: 4 residues within 4Å:- Chain A: Y.262, N.263, L.264, R.265
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.263, A:L.264, A:R.265
PEG.17: 4 residues within 4Å:- Chain A: F.385, A.389, K.390, S.391
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.389, A:K.390, A:S.391
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.18: 3 residues within 4Å:- Chain A: D.624, G.625
- Ligands: PG4.22
No protein-ligand interaction detected (PLIP)PGE.19: 7 residues within 4Å:- Chain A: D.257, D.537, Q.538, K.541, D.550, W.552, F.560
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.257, A:D.550
- Water bridges: A:Q.538, A:K.541
PGE.20: 5 residues within 4Å:- Chain A: L.615, P.619, A.620, M.629
- Ligands: ACT.24
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.620
- Water bridges: A:M.629
- 3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.21: 14 residues within 4Å:- Chain A: P.576, R.577, D.578, V.588, Q.589, T.593, A.649, R.652, L.653, D.656, H.658, S.659, P.660, E.662
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.578, A:Q.589, A:L.653
- Water bridges: A:S.644
PG4.22: 7 residues within 4Å:- Chain A: L.47, A.52, R.55, P.56, H.63, D.624
- Ligands: PGE.18
No protein-ligand interaction detected (PLIP)PG4.23: 7 residues within 4Å:- Chain A: A.566, E.569, Q.570, Y.574, R.670, L.689, R.693
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.570, A:R.670
- 8 x ACT: ACETATE ION(Non-functional Binders)
ACT.24: 4 residues within 4Å:- Chain A: T.627, M.629, A.678
- Ligands: PGE.20
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:T.627
- Hydrogen bonds: A:T.627
ACT.25: 6 residues within 4Å:- Chain A: Y.183, L.184, A.292, M.293, T.294, E.295
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.292, A:T.294, A:E.295
ACT.26: 3 residues within 4Å:- Chain A: D.51, G.66, R.577
No protein-ligand interaction detected (PLIP)ACT.27: 3 residues within 4Å:- Chain A: G.44, D.46, P.508
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.508
ACT.28: 4 residues within 4Å:- Chain A: Y.491, H.533
- Ligands: RDF.2, ACT.31
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.533
ACT.29: 3 residues within 4Å:- Chain A: Q.161, G.170, V.171
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.161
ACT.30: 5 residues within 4Å:- Chain A: D.515, E.516, Y.611, L.615, P.621
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.621
ACT.31: 8 residues within 4Å:- Chain A: Y.491, P.493, H.533, D.536, Q.538, G.539
- Ligands: PEG.14, ACT.28
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.491, A:H.533
- Water bridges: A:R.256
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.32: 3 residues within 4Å:- Chain A: Y.676, D.680, V.681
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.680
SO4.33: 7 residues within 4Å:- Chain A: I.568, H.572, H.587, V.588, Q.589, G.590, A.591
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.590, A:A.591
- Salt bridges: A:H.572, A:H.587
SO4.34: 4 residues within 4Å:- Chain A: T.188, R.255, R.299
- Ligands: PEG.14
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.188
- Salt bridges: A:R.255, A:R.299
SO4.35: 4 residues within 4Å:- Chain A: R.78, A.79, T.80, R.85
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.79, A:T.80, A:T.80, A:T.80
- Salt bridges: A:R.85
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraris, D.M. et al., Crystal Structure of Mycobacterium Tuberculosis Zinc-Dependent Metalloprotease-1 (Zmp1), a Metalloprotease Involved in Pathogenicity. J.Biol.Chem. (2011)
- Release Date
- 2011-08-03
- Peptides
- ENDOPEPTIDASE, PEPTIDASE FAMILY M13: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x RDF: N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN(Non-covalent)
- 15 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 8 x ACT: ACETATE ION(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraris, D.M. et al., Crystal Structure of Mycobacterium Tuberculosis Zinc-Dependent Metalloprotease-1 (Zmp1), a Metalloprotease Involved in Pathogenicity. J.Biol.Chem. (2011)
- Release Date
- 2011-08-03
- Peptides
- ENDOPEPTIDASE, PEPTIDASE FAMILY M13: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B