SMTL ID : 3zvk.1

Crystal structure of VapBC2 from Rickettsia felis bound to a DNA fragment from their promoter

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-oligomer

Ligands

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 10 residues within 4Å: Chain E: E.20, F.21, R.22, F.23, S.24, V.25, P.41 Chain H: K.35, G.36, I.37 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain H Hydrogen bonds: E:S.24, E:S.24, E:S.24, E:V.25, H:K.35 MES.2: 10 residues within 4Å: Chain F: E.20, F.21, R.22, F.23, S.24, V.25, P.41 Chain G: K.35, G.36, I.37 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:S.24, F:V.25 MES.3: 7 residues within 4Å: Chain F: K.35 Chain G: E.20, F.21, R.22, F.23, S.24, P.41 4 PLIP interactions: 3 interactions with chain G, 1 interactions with chain F Hydrogen bonds: G:F.21, G:F.21, G:S.24, F:K.35 MES.4: 9 residues within 4Å: Chain E: K.35, I.37 Chain H: E.20, F.21, R.22, F.23, S.24, V.25, P.41 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:S.24, H:V.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mate, M.J. et al., Crystal Structure of the DNA-Bound Vapbc2 Antitoxin/Toxin Pair from Rickettsia Felis. Nucleic Acids Res. (2012)

Release Date

2011-12-14

Peptides

TOXIN OF TOXIN-ANTITOXIN SYSTEM: ABCD
ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

TOXIN OF TOXIN-ANTITOXIN SYSTEM

ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB