SMTL ID : 3zvy.1 (1 other biounit)

PHD finger of human UHRF1 in complex with unmodified histone H3 N- terminal tail

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- LYS- GLN: HISTONE H3.1(Non-covalent)

ALA-ARG-THR-LYS-GLN.1: 16 residues within 4Å: Chain A: C.21, A.22, P.32, D.33, Q.35, L.36, M.37, C.38, D.39, D.42, A.44, V.57, P.58, E.60, D.61, W.63 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.36, A:V.57, A:W.63 Hydrogen bonds: A:C.21, A:P.32, A:Q.35, A:M.37, A:M.37, A:C.38, A:E.60 Water bridges: A:Q.35, A:D.39, A:D.39 Salt bridges: A:D.39, A:D.42

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.7, C.10, C.18, C.21 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:C.18, A:C.21 ZN.3: 4 residues within 4Å: Chain A: C.23, C.26, H.46, C.49 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.23, A:C.26, A:H.46, A:C.49 ZN.4: 4 residues within 4Å: Chain A: C.38, C.41, C.65, C.68 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.38, A:C.41, A:C.65, A:C.68 ZN.5: 3 residues within 4Å: Chain A: H.24, E.67 Ligands: CL.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.24, A:E.67, A:E.67

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: H.24, E.67 Ligands: ZN.5 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: H.9 Ligand excluded by PLIP

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.8: 2 residues within 4Å: Chain A: L.25, C.49 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lallous, N. et al., The Phd Finger of Human Uhrf1 Reveals a New Subgroup of Unmethylated Histone H3 Tail Readers. Plos One (2011)

Release Date

2011-12-07

Peptides

E3 UBIQUITIN-PROTEIN LIGASE UHRF1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 UBIQUITIN-PROTEIN LIGASE UHRF1

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