SMTL ID : 3zw5.1

Crystal structure of the human Glyoxalase domain-containing protein 5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: R.122, T.123, Y.133 Chain B: F.56, K.57, R.60, N.71 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.71, A:T.123, A:T.123 Water bridges: B:K.57, B:R.60 Salt bridges: B:K.57, B:R.60 SO4.4: 6 residues within 4Å: Chain A: F.56, K.57, R.60 Chain B: R.122, T.123, Y.133 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.71, B:T.123, B:T.123 Water bridges: A:R.60, A:R.60, B:T.123 Salt bridges: A:K.57, A:R.60

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: I.38, T.55, E.58, D.59, K.61 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: F.44, C.111, V.113 1 PLIP interactions: 1 interactions with chain A Water bridges: A:F.44 EDO.5: 4 residues within 4Å: Chain B: K.47, I.48, C.111, V.113 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.47, B:C.111 Water bridges: B:F.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muniz, J.R.C. et al., Crystal Structure of the Human Glyoxalase Domain-Containing Protein 5. To be Published

Release Date

2011-08-10

Peptides

GLYOXALASE DOMAIN-CONTAINING PROTEIN 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GLYOXALASE DOMAIN-CONTAINING PROTEIN 5