SMTL ID : 3zxt.2 (1 other biounit)

Dimeric structure of DAPK-1 catalytic domain in complex with AMPPCP- Mg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: E.143, N.144, D.161 Ligands: ACP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.161 MG.4: 4 residues within 4Å: Chain B: E.143, N.144, D.161 Ligands: ACP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.161

2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.2: 16 residues within 4Å: Chain A: L.19, G.22, V.27, A.40, K.42, E.64, E.94, V.96, E.100, E.143, N.144, M.146, I.160, D.161, G.163 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.22, A:G.22, A:K.42, A:E.64, A:E.94, A:V.96, A:E.143, A:D.161, A:D.161, A:D.161 Water bridges: A:D.161 Salt bridges: A:K.42 ACP.3: 17 residues within 4Å: Chain B: L.19, G.22, Q.23, V.27, A.40, K.42, I.77, L.93, E.94, L.95, V.96, E.143, N.144, M.146, I.160, D.161 Ligands: MG.4 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.23, B:K.42, B:E.94, B:V.96, B:E.143, B:N.144 Salt bridges: B:K.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Diego, I. et al., A Journey Through the Dap Kinase Architecture. To be Published

Release Date

2012-07-25

Peptides

DEATH-ASSOCIATED PROTEIN KINASE 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

DEATH-ASSOCIATED PROTEIN KINASE 1

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