SMTL ID : 3zy2.1

CRYSTAL STRUCTURE OF POFUT1 IN COMPLEX WITH GDP (HIGH RESOLUTION DATASET)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: R.219 Chain B: E.111 Ligands: GDP.2 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.111, H2O.17, H2O.488 MN.3: 3 residues within 4Å: Chain A: E.111 Chain B: R.219 Ligands: GDP.4 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.111, H2O.137, H2O.368

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 16 residues within 4Å: Chain A: R.19, F.20, G.21, N.22, H.217, R.219, A.286, S.287, D.288, D.313, M.315, S.334, T.335, F.336 Chain B: E.111 Ligands: MN.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:R.19, A:R.19, A:F.20, A:G.21, A:N.22, A:N.22, A:R.219, A:D.313, A:T.335, A:T.335, A:F.336 Water bridges: A:R.19, A:K.50, A:D.313 Salt bridges: A:R.219, A:D.313 pi-Stacking: A:F.336 GDP.4: 16 residues within 4Å: Chain A: E.111 Chain B: R.19, F.20, G.21, N.22, H.217, R.219, A.286, S.287, D.288, D.313, M.315, S.334, T.335, F.336 Ligands: MN.3 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:R.19, B:R.19, B:F.20, B:G.21, B:N.22, B:N.22, B:R.219, B:D.313, B:T.335, B:T.335, B:T.335, B:F.336 Water bridges: B:K.50, B:D.288, B:D.313 Salt bridges: B:R.219, B:D.313 pi-Stacking: B:F.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lira-Navarrete, E. et al., Structural Insights Into the Mechanism of Protein O-Fucosylation. Plos One (2011)

Release Date

2011-09-14

Peptides

PUTATIVE GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PUTATIVE GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1

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