SMTL ID : 3zy7.1

Crystal structure of computationally redesigned gamma-adaptin appendage domain forming a symmetric homodimer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.09 Å

Oligo State

homo-dimer

Ligands

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 8 residues within 4Å: Chain A: Y.10, A.12, L.13, L.15, F.100, V.107, S.109 Chain B: L.13 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.13, A:L.15, A:F.100, A:V.107 Hydrogen bonds: A:Y.10 IPA.4: 6 residues within 4Å: Chain B: Y.10, A.12, L.13, L.15, F.100, V.107 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.100, B:V.107 Hydrogen bonds: B:Y.10, B:Y.10

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain B: I.4, P.5, S.6, T.20, F.21, E.22 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.5, B:T.20, B:F.21 Water bridges: B:I.4 PEG.3: 10 residues within 4Å: Chain B: D.11, A.12, L.13, G.14, L.15, K.16, S.38, N.39, S.40, N.74 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.14, B:S.40, B:N.74, B:N.74 Water bridges: B:L.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stranges, P.B. et al., Computational Design of a Symmetric Homodimer Using Beta-Strand Assembly. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-12-28

Peptides

AP-1 COMPLEX SUBUNIT GAMMA-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AP-1 COMPLEX SUBUNIT GAMMA-1