SMTL ID : 3zyg.2 (1 other biounit)

NETRING2 LAM AND EGF1 DOMAINS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.128, E.300, S.302, Q.304, P.314 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.300, A:S.302, A:Q.304 Water bridges: A:Q.304 NAG.2: 5 residues within 4Å: Chain A: P.56, N.122, E.152, R.253, R.255 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.56 Hydrogen bonds: A:R.255

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: L.94, D.97, E.99, T.105, S.279 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.94, A:E.99, A:T.105, A:S.279, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seiradake, E. et al., Structural Basis for Cell Surface Patterning Through Netring-Ngl Interactions. Embo J. (2011)

Release Date

2011-10-05

Peptides

NETRIN-G2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NETRIN-G2

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