SMTL ID : 3zyv.1 (1 other biounit)

Crystal structure of the mouse liver Aldehyde Oxidase 3 (mAOX3)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: G.872, T.875, P.876, D.877, S.879, S.912, N.913 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.875, A:N.913 NA.7: 7 residues within 4Å: Chain B: G.872, T.875, P.876, D.877, S.879, S.912, N.913 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.913, B:N.913 Water bridges: B:T.875

4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 8 residues within 4Å: Chain A: Q.116, C.117, G.118, C.120, C.152, R.153, C.154, M.749 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.117, A:C.120, A:C.152, A:C.154 FES.3: 10 residues within 4Å: Chain A: Y.45, C.47, G.48, G.50, D.51, C.52, G.53, C.55, T.75, C.77 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.47, A:C.52, A:C.55, A:C.77 FES.8: 8 residues within 4Å: Chain B: Q.116, C.117, G.118, C.120, C.152, R.153, C.154, M.749 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.117, B:C.120, B:C.152, B:C.154 FES.9: 10 residues within 4Å: Chain B: Y.45, G.46, C.47, G.48, G.50, D.51, C.52, G.53, C.55, C.77 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.47, B:C.52, B:C.55, B:C.77

2 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)

MTE.4: 20 residues within 4Å: Chain A: Q.116, C.154, G.801, A.802, F.803, G.804, R.917, L.1043, G.1044, Q.1045, T.1082, G.1083, A.1084, S.1085, T.1086, G.1087, A.1088, Q.1199, G.1265 Ligands: MOS.5 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.116, A:A.802, A:F.803, A:L.1043, A:Q.1045, A:G.1087, A:A.1088, A:Q.1199, A:G.1265 MTE.10: 20 residues within 4Å: Chain B: Q.116, C.154, G.801, A.802, F.803, G.804, R.917, L.1043, G.1044, Q.1045, I.1047, T.1082, G.1083, A.1084, S.1085, T.1086, G.1087, Q.1199, G.1265 Ligands: MOS.11 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Q.116, B:A.802, B:F.803, B:L.1043, B:Q.1045, B:G.1087, B:A.1088, B:Q.1199, B:Q.1199 Water bridges: B:Q.1045 pi-Stacking: B:F.803

2 x MOS: DIOXOTHIOMOLYBDENUM(VI) ION(Non-covalent)

MOS.5: 9 residues within 4Å: Chain A: Q.772, G.804, F.916, R.917, G.918, G.1083, A.1084, E.1266 Ligands: MTE.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.772, A:A.1084 MOS.11: 9 residues within 4Å: Chain B: Q.772, G.804, F.916, R.917, G.918, G.1083, A.1084, E.1266 Ligands: MTE.10 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.772, B:A.1084

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.6: 30 residues within 4Å: Chain A: G.49, G.50, P.263, L.264, V.265, I.266, G.267, N.268, T.269, Y.270, L.271, L.294, T.308, L.312, L.344, A.345, A.353, S.354, G.357, H.358, I.360, L.363, T.365, S.366, D.367, V.410, L.411, R.429, A.437, F.438 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:A.345, A:F.438, A:F.438 Hydrogen bonds: A:L.264, A:L.264, A:I.266, A:G.267, A:N.268, A:T.269, A:T.269, A:T.269, A:Y.270, A:L.271, A:T.308, A:A.345, A:S.354, A:H.358, A:D.367, A:D.367, A:L.411, A:L.411, A:R.429 Water bridges: A:A.437 pi-Stacking: A:F.438 FAD.12: 30 residues within 4Å: Chain B: G.49, G.50, P.263, L.264, V.265, I.266, G.267, N.268, T.269, Y.270, L.271, L.294, T.308, L.312, L.344, A.345, I.349, V.352, A.353, S.354, G.357, H.358, I.360, S.366, D.367, V.410, L.411, R.429, A.437, F.438 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:A.345, B:I.349, B:I.349, B:F.438 Hydrogen bonds: B:L.264, B:L.264, B:I.266, B:G.267, B:N.268, B:T.269, B:T.269, B:T.269, B:Y.270, B:L.271, B:A.345, B:S.354, B:S.354, B:H.358, B:D.367, B:D.367, B:D.367, B:L.368, B:L.411, B:L.411, B:R.429 pi-Stacking: B:F.438

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coelho, C. et al., The First Mammalian Aldehyde Oxidase Crystal Structure: Insights Into Substrate Specificity. J.Biol.Chem. (2012)

Release Date

2012-09-05

Peptides

AOX3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AOX3

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