SMTL ID : 3zzv.1

BambL complexed with Htype2 tetrasaccharide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

homo-trimer

Ligands

5 x NAG- GAL- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-GAL-FUC.1: 11 residues within 4Å: Chain A: R.15, E.26, D.30, Y.35, G.37, A.38, F.39, V.57, I.59, W.74, W.79 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.57, A:I.59 Hydrogen bonds: A:R.15, A:E.26, A:A.38, A:F.39 Water bridges: A:D.30 NAG-GAL-FUC.2: 15 residues within 4Å: Chain A: W.51, S.53, H.58, R.60, E.71, D.75, G.82, A.83, Y.84 Chain B: T.10, T.11, P.12, I.14, Y.29, W.34 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.51, B:I.14, B:Y.29 Hydrogen bonds: A:R.60, A:E.71, A:A.83, A:Y.84, A:S.53, A:R.60 Water bridges: A:S.53, A:H.58 Salt bridges: A:H.58 NAG-GAL-FUC.3: 10 residues within 4Å: Chain B: R.15, E.26, D.30, Y.35, G.37, A.38, F.39, I.59, W.74, W.79 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.59 Hydrogen bonds: B:R.15, B:E.26, B:A.38, B:F.39, B:D.30, B:D.30 Water bridges: B:Y.35, B:W.74 NAG-GAL-FUC.4: 12 residues within 4Å: Chain C: W.8, R.15, E.26, D.30, Y.35, G.37, A.38, F.39, V.57, I.59, W.74, W.79 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:W.8, C:V.57, C:I.59 Hydrogen bonds: C:R.15, C:E.26, C:Y.35, C:A.38, C:F.39, C:Y.35 NAG-GAL-FUC.5: 15 residues within 4Å: Chain A: T.10, T.11, I.14, Y.29, W.34 Chain C: W.51, S.53, H.58, R.60, E.71, C.73, D.75, G.82, A.83, Y.84 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:W.51, A:I.14, A:Y.29 Hydrogen bonds: C:R.60, C:E.71, C:A.83, C:Y.84, C:S.53, C:R.60 Water bridges: C:T.80, A:T.11 Salt bridges: C:H.58

1 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.6: 10 residues within 4Å: Chain B: W.51, R.60, E.71, G.82, A.83, Y.84 Chain C: P.12, I.14, Y.29, W.34 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:W.51, C:I.14, C:Y.29 Hydrogen bonds: B:E.71, B:A.83, B:Y.84 Salt bridges: B:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Audfray, A. et al., Fucose-Binding Lectin from Opportunistic Pathogen Burkholderia Ambifaria Binds to Both Plant and Human Oligosaccharidic Epitopes. J.Biol.Chem. (2012)

Release Date

2011-12-21

Peptides

BAMBL LECTIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

BAMBL LECTIN

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