SMTL ID : 456c.1

CRYSTAL STRUCTURE OF COLLAGENASE-3 (MMP-13) COMPLEXED TO A DIPHENYL-ETHER SULPHONE BASED HYDROXAMIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.119, E.120, H.123, H.129 Ligands: CBP.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.123, A:H.129 ZN.2: 4 residues within 4Å: Chain A: H.69, D.71, H.84, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97 ZN.5: 5 residues within 4Å: Chain B: H.119, E.120, H.123, H.129 Ligands: CBP.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.119, B:H.123, B:H.129 ZN.6: 4 residues within 4Å: Chain B: H.69, D.71, H.84, H.97 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.69, B:D.71, B:D.71, B:H.84, B:H.97

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain A: D.76, G.77, P.78, S.79, L.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:S.79, A:L.81, A:D.99, A:E.102 CA.7: 7 residues within 4Å: Chain B: D.76, G.77, P.78, S.79, L.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:D.76, B:G.77, B:S.79, B:L.81, B:D.99, B:E.102

2 x CBP: 2-{4-[4-(4-CHLORO-PHENOXY)-BENZENESULFONYL]-TETRAHYDRO-PYRAN-4-YL}-N-HYDROXY-ACETAMIDE(Non-covalent)

CBP.4: 20 residues within 4Å: Chain A: G.80, L.81, L.82, A.83, H.84, A.85, L.115, V.116, H.119, E.120, H.123, H.129, A.135, L.136, F.138, P.139, I.140, Y.141, T.142 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.116, A:H.119, A:Y.141, A:Y.141 Hydrogen bonds: A:A.83, A:E.120 Water bridges: A:A.85, A:A.85 CBP.8: 20 residues within 4Å: Chain B: G.80, L.81, L.82, A.83, H.84, A.85, L.115, V.116, H.119, E.120, H.123, H.129, A.135, L.136, F.138, P.139, I.140, Y.141, T.142 Ligands: ZN.5 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.116, B:P.139, B:Y.141, B:Y.141 Hydrogen bonds: B:A.83, B:E.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovejoy, B. et al., Crystal structures of MMP-1 and -13 reveal the structural basis for selectivity of collagenase inhibitors. Nat.Struct.Biol. (1999)

Release Date

1999-08-06

Peptides

MMP-13: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MMP-13

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