SMTL ID : 4akc.1

Structure of Galactose Binding lectin from Champedak (CGB) with Gal(beta)1,3-GalNac

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-4-4-mer

Ligands

4 x A2G- GAL: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)

A2G-GAL.1: 7 residues within 4Å: Chain A: G.1, F.47, Y.78, G.121, Y.122, W.123, D.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.1, A:G.1, A:Y.122, A:W.123, A:G.1 Water bridges: A:G.121 A2G-GAL.2: 8 residues within 4Å: Chain C: G.1, F.47, Y.78, V.80, G.121, Y.122, W.123, D.125 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.47 Hydrogen bonds: C:G.1, C:G.1, C:G.121, C:Y.122, C:Y.122, C:W.123, C:G.1 A2G-GAL.3: 8 residues within 4Å: Chain E: G.1, F.47, Y.78, V.80, G.121, Y.122, W.123, D.125 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:F.47 Hydrogen bonds: E:G.1, E:G.1, E:G.121, E:Y.122, E:Y.122, E:W.123, E:W.123, E:G.1 A2G-GAL.4: 8 residues within 4Å: Chain G: G.1, Y.78, V.80, G.121, Y.122, W.123, D.125 Chain H: A.17 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:G.1, G:G.1, G:G.121, G:Y.122, G:Y.122, G:W.123, G:G.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gabrielsen, M. et al., Structures and Binding Specificity of Galactose- and Mannose-Binding Lectins from Champedak: Differences from Jackfruit Lectins. Acta Crystallogr.,Sect.F (2014)

Release Date

2013-02-27

Peptides

AGGLUTININ ALPHA CHAIN: ACEG
AGGLUTININ BETA-4 CHAIN: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

B
B

D
D

F
F

H
H

AGGLUTININ ALPHA CHAIN

AGGLUTININ BETA-4 CHAIN

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