SMTL ID : 4k5u.1

Recognition of the BG-H Antigen by a Lamprey Variable Lymphocyte Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.1: 7 residues within 4Å: Chain A: W.84, N.86, C.110, G.132, D.134, W.156, W.187 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.86, A:D.134 Water bridges: A:L.109 GAL.2: 8 residues within 4Å: Chain B: W.84, N.86, C.110, G.132, D.134, Q.135, W.156, W.187 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.86, B:D.134, B:Q.135 GAL.3: 8 residues within 4Å: Chain C: W.84, N.86, C.110, G.132, D.134, Q.135, W.156, W.187 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.86, C:D.134, C:Q.135 Water bridges: C:L.109 GAL.4: 7 residues within 4Å: Chain D: W.84, N.86, C.110, G.132, D.134, Q.135, W.156 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.86, D:D.134, D:Q.135 Water bridges: D:L.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, M. et al., Recognition of the thomsen-friedenreich pancarcinoma carbohydrate antigen by a lamprey variable lymphocyte receptor. J.Biol.Chem. (2013)

Release Date

2013-06-26

Peptides

Variable lymphocyte receptor: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

Variable lymphocyte receptor

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