SMTL ID : 4k79.1

Recognition of the Thomsen-Friedenreich Antigen by a Lamprey Variable Lymphocyte Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

3 x A2G- GAL: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)

A2G-GAL.1: 11 residues within 4Å: Chain B: W.62, W.84, N.86, S.87, G.108, C.110, G.132, D.134, Q.135, W.156, W.187 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.84, B:N.86, B:D.134, B:Q.135 A2G-GAL.2: 11 residues within 4Å: Chain C: W.62, W.84, N.86, S.87, G.108, C.110, G.132, D.134, Q.135, W.156, W.187 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:N.86 Hydrogen bonds: C:W.84, C:N.86, C:N.86, C:D.134, C:Q.135 A2G-GAL.3: 12 residues within 4Å: Chain D: H.60, W.62, W.84, N.86, S.87, G.108, C.110, G.132, D.134, Q.135, W.156, W.187 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:H.60, D:N.86, D:S.87, D:N.86, D:D.134, D:Q.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, M. et al., Recognition of the thomsen-friedenreich pancarcinoma carbohydrate antigen by a lamprey variable lymphocyte receptor. J.Biol.Chem. (2013)

Release Date

2013-06-26

Peptides

Variable lymphocyte receptor: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Variable lymphocyte receptor

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