SMTL ID : 4mj0.1

BK Polyomavirus VP1 pentamer in complex with GD3 oligosaccharide

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.70 Å
Oligo State
homo-pentamer
Ligands
1 x BGC- GAL- SIA- SIA: N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
2 x SIA- SIA: N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid(Non-covalent)
1 x GAL- SIA- SIA: N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose
7 x GOL: GLYCEROL(Non-functional Binders)
5 x CL: CHLORIDE ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Neu, U. et al., A Structure-Guided Mutation in the Major Capsid Protein Retargets BK Polyomavirus. Plos Pathog. (2013)
Release Date
2013-11-06
Peptides
VP1 capsid protein: ABCDE
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E

VP1 capsid protein

Related Entries With Identical Sequence

4mj1.1 | 7pa7.1 | 7pa7.2 | 7zip.1 | 7ziq.1