SMTL ID : 4p25.1 (1 other biounit)

Structure of the P domain from a GI.7 Norovirus variant in complex with LeY HBGA.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x NAG- GAL- FUC- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-FUC-FUC.1: 13 residues within 4Å: Chain A: D.108, H.110, R.127, D.129, W.161, S.163, P.164, T.166, S.167, G.168, V.212, S.213 Chain B: G.122 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:G.122, A:G.168, A:S.213, A:S.213, A:D.108, A:H.110, A:S.163, A:S.163, A:T.166 NAG-GAL-FUC-FUC.2: 13 residues within 4Å: Chain A: S.121, G.122 Chain B: D.108, H.110, R.127, D.129, W.161, S.163, P.164, T.166, S.167, V.212, S.213 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.213, B:S.213, A:G.122, B:H.110, B:S.163, B:S.163, B:T.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shanker, S. et al., Structural analysis of determinants of histo-blood group antigen binding specificity in genogroup I noroviruses. J.Virol. (2014)

Release Date

2014-04-02

Peptides

Major capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Major capsid protein

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