SMTL ID : 4p3i.1 (1 other biounit)

Structure of the P domain from a GI.7 Norovirus variant in complex with LeA HBGA.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-dimer

Ligands

2 x NAG- GAL- FUC: beta-D-galactopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-FUC.1: 11 residues within 4Å: Chain A: D.107, H.109, W.160, S.162, P.163, T.165, S.166, V.211, S.212 Chain B: S.120, G.121 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.160 Hydrogen bonds: A:S.212, B:G.121, A:H.109, A:S.162, A:S.162, A:T.165 NAG-GAL-FUC.2: 9 residues within 4Å: Chain A: S.120, G.121 Chain B: D.107, H.109, S.162, P.163, T.165, S.166, V.211 8 PLIP interactions: 2 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:S.120, A:G.121, B:D.107, B:H.109, B:S.162, B:S.162, B:S.166 Water bridges: B:G.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shanker, S. et al., Structural analysis of determinants of histo-blood group antigen binding specificity in genogroup I noroviruses. J.Virol. (2014)

Release Date

2014-04-02

Peptides

P domain of VP1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

P domain of VP1

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