- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.06 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NDG- GLA- GLC- RAM- NAG: alpha-L-rhamnopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)]alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-glucopyranose
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.2: 3 residues within 4Å:- Chain A: V.456, N.457, Y.485
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:N.457
- Water bridges: B:E.467, B:E.467
TRS.12: 3 residues within 4Å:- Chain B: V.456, N.457, Y.485
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:N.457
- Water bridges: C:E.467, C:E.467
TRS.22: 3 residues within 4Å:- Chain C: V.456, N.457, Y.485
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:N.457
- Water bridges: A:E.467, A:E.467
- 18 x FMT: FORMIC ACID(Non-functional Binders)
FMT.3: 3 residues within 4Å:- Chain A: N.556, L.557, D.558
Ligand excluded by PLIPFMT.4: 3 residues within 4Å:- Chain A: L.557, E.580
- Chain C: K.568
Ligand excluded by PLIPFMT.5: 4 residues within 4Å:- Chain A: R.28, D.32
- Chain B: W.41, V.51
Ligand excluded by PLIPFMT.6: 3 residues within 4Å:- Chain A: S.167, S.168, A.226
Ligand excluded by PLIPFMT.7: 5 residues within 4Å:- Chain A: P.54, G.55, Y.85, T.86, Y.88
Ligand excluded by PLIPFMT.8: 5 residues within 4Å:- Chain A: F.345, T.385, Y.410, Y.413, Q.445
Ligand excluded by PLIPFMT.13: 3 residues within 4Å:- Chain B: N.556, L.557, D.558
Ligand excluded by PLIPFMT.14: 3 residues within 4Å:- Chain A: K.568
- Chain B: L.557, E.580
Ligand excluded by PLIPFMT.15: 4 residues within 4Å:- Chain B: R.28, D.32
- Chain C: W.41, V.51
Ligand excluded by PLIPFMT.16: 3 residues within 4Å:- Chain B: S.167, S.168, A.226
Ligand excluded by PLIPFMT.17: 5 residues within 4Å:- Chain B: P.54, G.55, Y.85, T.86, Y.88
Ligand excluded by PLIPFMT.18: 5 residues within 4Å:- Chain B: F.345, T.385, Y.410, Y.413, Q.445
Ligand excluded by PLIPFMT.23: 3 residues within 4Å:- Chain C: N.556, L.557, D.558
Ligand excluded by PLIPFMT.24: 3 residues within 4Å:- Chain B: K.568
- Chain C: L.557, E.580
Ligand excluded by PLIPFMT.25: 4 residues within 4Å:- Chain A: W.41, V.51
- Chain C: R.28, D.32
Ligand excluded by PLIPFMT.26: 3 residues within 4Å:- Chain C: S.167, S.168, A.226
Ligand excluded by PLIPFMT.27: 5 residues within 4Å:- Chain C: P.54, G.55, Y.85, T.86, Y.88
Ligand excluded by PLIPFMT.28: 5 residues within 4Å:- Chain C: F.345, T.385, Y.410, Y.413, Q.445
Ligand excluded by PLIP- 6 x NA: SODIUM ION(Non-functional Binders)
NA.9: 2 residues within 4Å:- Chain A: G.99
- Ligands: NDG-GLA-GLC-RAM-NAG.1
No protein-ligand interaction detected (PLIP)NA.10: 3 residues within 4Å:- Chain A: A.453, S.480, Q.482
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.480, A:Q.482
NA.19: 2 residues within 4Å:- Chain B: G.99
- Ligands: NDG-GLA-GLC-RAM-NAG.11
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.99
NA.20: 3 residues within 4Å:- Chain B: A.453, S.480, Q.482
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.482, B:Q.482
NA.29: 2 residues within 4Å:- Chain C: G.99
- Ligands: NDG-GLA-GLC-RAM-NAG.21
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:G.99
NA.30: 3 residues within 4Å:- Chain C: A.453, S.480, Q.482
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.480, C:Q.482
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gohlke, U. et al., Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein. to be published
- Release Date
- 2016-01-27
- Peptides
- Tail spike protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.06 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NDG- GLA- GLC- RAM- NAG: alpha-L-rhamnopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)]alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-glucopyranose
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 18 x FMT: FORMIC ACID(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gohlke, U. et al., Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein. to be published
- Release Date
- 2016-01-27
- Peptides
- Tail spike protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A