SMTL ID : 4zet.1 (1 other biounit)

Blood dendritic cell antigen 2 (BDCA-2) complexed with GalGlcNAcMan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x MAN- NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose

MAN-NAG-GAL.1: 15 residues within 4Å: Chain A: M.35, N.71, S.72, S.73, E.106, N.108, E.112, N.118, R.120, N.128, D.129, I.130, V.134, Q.136 Ligands: CA.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.71, A:S.73, A:Q.136, A:N.108, A:E.112, A:N.128, A:N.128, A:S.73, A:N.118, A:R.120, A:N.128

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.106, N.108, E.112, N.128, D.129 Ligands: MAN-NAG-GAL.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.106, A:E.112, A:D.129, A:D.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jegouzo, S.A. et al., A Novel Mechanism for Binding of Galactose-terminated Glycans by the C-type Carbohydrate Recognition Domain in Blood Dendritic Cell Antigen 2. J.Biol.Chem. (2015)

Release Date

2015-05-27

Peptides

C-type lectin domain family 4 member C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C-type lectin domain family 4 member C

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