SMTL ID : 4a08.1

Structure of hsDDB1-drDDB2 bound to a 13 bp CPD-duplex (purine at D-1 position) at 3.0 A resolution (CPD 1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 6 residues within 4Å: Chain A: R.289, M.301, E.322, L.324, L.355, N.356 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.320 MES.2: 5 residues within 4Å: Chain A: V.38, I.239, H.280, N.281, R.282 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.281, A:R.282 Salt bridges: A:H.280

2 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.3: 2 residues within 4Å: Chain B: D.162 Chain D: G.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.162 CA.4: 2 residues within 4Å: Chain D: G.3, G.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scrima, A. et al., The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation. Cell(Cambridge,Mass.) (2011)

Release Date

2011-11-30

Peptides

DNA DAMAGE-BINDING PROTEIN 1: A
DNA DAMAGE-BINDING PROTEIN 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA DAMAGE-BINDING PROTEIN 1

DNA DAMAGE-BINDING PROTEIN 2

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